| Single-cell transcriptomics of human and mouse lung cancers reveals conserved myeloid populations across individuals and species R Zilionis, C Engblom, C Pfirschke, V Savova, D Zemmour, HD Saatcioglu, ... Immunity 50 (5), 1317-1334. e10, 2019 | 1075 | 2019 |
| A single-cell atlas of the airway epithelium reveals the CFTR-rich pulmonary ionocyte LW Plasschaert, R Žilionis, R Choo-Wing, V Savova, J Knehr, G Roma, ... Nature 560 (7718), 377-381, 2018 | 995 | 2018 |
| Single-cell barcoding and sequencing using droplet microfluidics R Zilionis, J Nainys, A Veres, V Savova, D Zemmour, AM Klein, L Mazutis Nature protocols 12 (1), 44-73, 2017 | 751 | 2017 |
| Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex S Hrvatin, DR Hochbaum, MA Nagy, M Cicconet, K Robertson, L Cheadle, ... Nature neuroscience 21 (1), 120-129, 2018 | 431 | 2018 |
| Single-cell gene expression reveals a landscape of regulatory T cell phenotypes shaped by the TCR D Zemmour, R Zilionis, E Kiner, AM Klein, D Mathis, C Benoist Nature immunology 19 (3), 291-301, 2018 | 377 | 2018 |
| Population snapshots predict early haematopoietic and erythroid hierarchies BK Tusi, SL Wolock, C Weinreb, Y Hwang, D Hidalgo, R Zilionis, ... Nature 555 (7694), 54-60, 2018 | 328 | 2018 |
| Osteoblasts remotely supply lung tumors with cancer-promoting SiglecFhigh neutrophils C Engblom, C Pfirschke, R Zilionis, J Da Silva Martins, SA Bos, G Courties, ... Science 358 (6367), eaal5081, 2017 | 327 | 2017 |
| Molecular diversification of regulatory T cells in nonlymphoid tissues JR DiSpirito, D Zemmour, D Ramanan, J Cho, R Zilionis, AM Klein, ... Science immunology 3 (27), eaat5861, 2018 | 147 | 2018 |
| Tumor-promoting Ly-6G+ SiglecFhigh cells are mature and long-lived neutrophils C Pfirschke, C Engblom, J Gungabeesoon, Y Lin, S Rickelt, R Zilionis, ... Cell reports 32 (12), 2020 | 84 | 2020 |
| A large pool of actively cycling progenitors orchestrates self-renewal and injury repair of an ectodermal appendage A Sharir, P Marangoni, R Zilionis, M Wan, T Wald, JK Hu, K Kawaguchi, ... Nature cell biology 21 (9), 1102-1112, 2019 | 81 | 2019 |
| Quantitative clonal analysis and single-cell transcriptomics reveal division kinetics, hierarchy, and fate of oral epithelial progenitor cells KB Jones, S Furukawa, P Marangoni, H Ma, H Pinkard, R D’Urso, ... Cell stem cell 24 (1), 183-192. e8, 2019 | 74 | 2019 |
| End Sequence Analysis Toolkit (ESAT) expands the extractable information from single-cell RNA-seq data A Derr, C Yang, R Zilionis, A Sergushichev, DM Blodgett, S Redick, ... Genome research 26 (10), 1397-1410, 2016 | 71 | 2016 |
| Resident Kupffer cells and neutrophils drive liver toxicity in cancer immunotherapy M Siwicki, NA Gort-Freitas, M Messemaker, R Bill, J Gungabeesoon, ... Science immunology 6 (61), eabi7083, 2021 | 57 | 2021 |
| DNA nanoparticles for improved protein synthesis in vitro R Galinis, G Stonyte, V Kiseliovas, R Zilionis, S Studer, D Hilvert, ... Angewandte Chemie 128 (9), 3172-3175, 2016 | 30 | 2016 |
| Macrophage-targeted therapy unlocks antitumoral cross-talk between IFNγ-secreting lymphocytes and IL12-producing dendritic cells C Pfirschke, R Zilionis, C Engblom, M Messemaker, AE Zou, S Rickelt, ... Cancer immunology research 10 (1), 40-55, 2022 | 28 | 2022 |
| Publisher Correction: Single-cell gene expression reveals a landscape of regulatory T cell phenotypes shaped by the TCR. D Zemmour, R Zilionis, E Kiner, AM Klein, D Mathis, C Benoist Nature Immunology 19 (6), 645-645, 2018 | 19 | 2018 |
| Identification of a targetable KRAS-mutant epithelial population in non-small cell lung cancer G Maroni, MA Bassal, I Krishnan, CW Fhu, V Savova, R Zilionis, ... Communications biology 4 (1), 370, 2021 | 16 | 2021 |
| Activation of NLRP3 inflammasome by virus-like particles of human polyomaviruses in macrophages A Lučiūnaitė, I Dalgėdienė, R Žilionis, K Mašalaitė, M Norkienė, ... Frontiers in immunology 13, 831815, 2022 | 10 | 2022 |
| Emergence of the erythroid lineage from multipotent hematopoiesis B Khoramian Tusi, SL Wolock, C Weinreb, Y Hwang, D Hidalgo, R Zilionis, ... BioRxiv, 261941, 2018 | 3 | 2018 |
| Increasing Fluid Viscosity Ensures Consistent Single-Cell Encapsulation E Pranauskaite, V Milkus, J Ritmejeris, R Zilionis, L Mazutis Analytical Chemistry 96 (18), 6898-6905, 2024 | | 2024 |
