Docking and scoring protein complexes: CAPRI 3rd Edition MF Lensink, R Méndez, SJ Wodak Proteins: Structure, Function, and Bioinformatics 69 (4), 704-718, 2007 | 404 | 2007 |
Assessment of CAPRI predictions in rounds 3–5 shows progress in docking procedures R Méndez, R Leplae, MF Lensink, SJ Wodak Proteins: Structure, Function, and Bioinformatics 60 (2), 150-169, 2005 | 399 | 2005 |
Molecular docking as a popular tool in drug design, an in silico travel J De Ruyck, G Brysbaert, R Blossey, MF Lensink Advances and Applications in Bioinformatics and Chemistry, 1-11, 2016 | 290 | 2016 |
Docking and scoring protein interactions: CAPRI 2009 MF Lensink, SJ Wodak Proteins: Structure, Function, and Bioinformatics 78 (15), 3073-3084, 2010 | 265 | 2010 |
Docking, scoring, and affinity prediction in CAPRI MF Lensink, SJ Wodak Proteins: Structure, Function, and Bioinformatics 81 (12), 2082-2095, 2013 | 260 | 2013 |
Modeling protein–protein and protein–peptide complexes: CAPRI 6th edition MF Lensink, S Velankar, SJ Wodak Proteins: Structure, Function, and Bioinformatics 85 (3), 359-377, 2017 | 214 | 2017 |
A conserved arginine plays a role in the catalytic cycle of the protein disulphide isomerases AK Lappi, MF Lensink, HI Alanen, KEH Salo, M Lobell, AH Juffer, ... Journal of molecular biology 335 (1), 283-295, 2004 | 154 | 2004 |
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 149 | 2016 |
LigASite—a database of biologically relevant binding sites in proteins with known apo -structures BH Dessailly, MF Lensink, CA Orengo, SJ Wodak Nucleic acids research 36 (suppl_1), D667-D673, 2007 | 97 | 2007 |
Blind predictions of protein interfaces by docking calculations in CAPRI MF Lensink, SJ Wodak Proteins: Structure, Function, and Bioinformatics 78 (15), 3085-3095, 2010 | 87 | 2010 |
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019 | 84 | 2019 |
Signal transduction in the photoactive yellow protein. I. Photon absorption and the isomerization of the chromophore G Groenhof, MF Lensink, HJC Berendsen, JG Snijders, AE Mark Proteins: Structure, Function, and Bioinformatics 48 (2), 202-211, 2002 | 84 | 2002 |
Phosphorylation by protein kinase CK2 modulates the activity of the ATP binding cassette A1 transporter S Roosbeek, F Peelman, A Verhee, C Labeur, H Caster, MF Lensink, ... Journal of Biological Chemistry 279 (36), 37779-37788, 2004 | 82 | 2004 |
Penetratin-membrane association: W48/R52/W56 shield the peptide from the aqueous phase MF Lensink, B Christiaens, J Vandekerckhove, A Prochiantz, M Rosseneu Biophysical Journal 88 (2), 939-952, 2005 | 80 | 2005 |
Modeling protein‐protein, protein‐peptide, and protein‐oligosaccharide complexes: CAPRI 7th edition MF Lensink, N Nadzirin, S Velankar, SJ Wodak Proteins: Structure, Function, and Bioinformatics 88 (8), 916-938, 2020 | 78 | 2020 |
The challenge of modeling protein assemblies: the CASP12‐CAPRI experiment MF Lensink, S Velankar, M Baek, L Heo, C Seok, SJ Wodak Proteins: Structure, Function, and Bioinformatics 86, 257-273, 2018 | 78 | 2018 |
Signal transduction in the photoactive yellow protein. II. Proton transfer initiates conformational changes G Groenhof, MF Lensink, HJC Berendsen, AE Mark Proteins: Structure, Function, and Bioinformatics 48 (2), 212-219, 2002 | 61 | 2002 |
Blind prediction of interfacial water positions in CAPRI MF Lensink, IH Moal, PA Bates, PL Kastritis, ASJ Melquiond, E Karaca, ... Proteins: Structure, Function, and Bioinformatics 82 (4), 620-632, 2014 | 60 | 2014 |
Score_set: a CAPRI benchmark for scoring protein complexes MF Lensink, SJ Wodak Proteins: Structure, Function, and Bioinformatics 82 (11), 3163-3169, 2014 | 57 | 2014 |
Homology-based modeling of 3D structures of protein–protein complexes using alignments of modified sequence profiles PJ Kundrotas, MF Lensink, E Alexov International journal of biological macromolecules 43 (2), 198-208, 2008 | 56 | 2008 |