| Normalization and missing value imputation for label-free LC-MS analysis YV Karpievitch, AR Dabney, RD Smith BMC bioinformatics 13, 1-9, 2012 | 356 | 2012 |
| Liquid chromatography mass spectrometry-based proteomics: biological and technological aspects YV Karpievitch, AD Polpitiya, GA Anderson, RD Smith, AR Dabney The annals of applied statistics 4 (4), 1797, 2010 | 261 | 2010 |
| A statistical framework for protein quantitation in bottom-up MS-based proteomics Y Karpievitch, J Stanley, T Taverner, J Huang, JN Adkins, C Ansong, ... Bioinformatics 25 (16), 2028-2034, 2009 | 195 | 2009 |
| Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation T Stuart, SR Eichten, J Cahn, YV Karpievitch, JO Borevitz, R Lister elife 5, e20777, 2016 | 193 | 2016 |
| Extensive transcriptomic and epigenomic remodelling occurs during Arabidopsis thaliana germination R Narsai, Q Gouil, D Secco, A Srivastava, YV Karpievitch, LC Liew, ... Genome biology 18, 1-18, 2017 | 160 | 2017 |
| Label-free quantitative LC–MS proteomics of Alzheimer’s disease and normally aged human brains VP Andreev, VA Petyuk, HM Brewer, YV Karpievitch, F Xie, J Clarke, ... Journal of proteome research 11 (6), 3053-3067, 2012 | 147 | 2012 |
| DanteR: an extensible R-based tool for quantitative analysis of-omics data T Taverner, YV Karpievitch, AD Polpitiya, JN Brown, AR Dabney, ... Bioinformatics 28 (18), 2404-2406, 2012 | 142 | 2012 |
| Metabolomics data normalization with EigenMS YV Karpievitch, SB Nikolic, R Wilson, JE Sharman, LM Edwards PloS one 9 (12), e116221, 2014 | 124 | 2014 |
| Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition YV Karpievitch, T Taverner, JN Adkins, SJ Callister, GA Anderson, ... Bioinformatics 25 (19), 2573-2580, 2009 | 120 | 2009 |
| An introspective comparison of random forest-based classifiers for the analysis of cluster-correlated data by way of RF++ YV Karpievitch, EG Hill, AP Leclerc, AR Dabney, JS Almeida PloS one 4 (9), e7087, 2009 | 79 | 2009 |
| Short-and long-term benefits for forest biodiversity of retaining unlogged patches in harvested areas SC Baker, CB Halpern, TJ Wardlaw, RL Crawford, RE Bigley, GJ Edgar, ... Forest Ecology and Management 353, 187-195, 2015 | 62 | 2015 |
| Aspergillus Infections and Progression of Structural Lung Disease in Children with Cystic Fibrosis O Breuer, A Schultz, LW Garratt, L Turkovic, T Rosenow, CP Murray, ... American journal of respiratory and critical care medicine 201 (6), 688-696, 2020 | 58 | 2020 |
| PrepMS: TOF MS data graphical preprocessing tool YV Karpievitch, EG Hill, AJ Smolka, JS Morris, KR Coombes, KA Baggerly, ... Bioinformatics 23 (2), 264-265, 2007 | 53 | 2007 |
| A statistical method for assessing peptide identification confidence in accurate mass and time tag proteomics JR Stanley, JN Adkins, GW Slysz, ME Monroe, SO Purvine, ... Analytical chemistry 83 (16), 6135-6140, 2011 | 50 | 2011 |
| HOME: a histogram based machine learning approach for effective identification of differentially methylated regions A Srivastava, YV Karpievitch, SR Eichten, JO Borevitz, R Lister BMC bioinformatics 20, 1-15, 2019 | 39 | 2019 |
| Evaluating abundance trends of iconic species using local ecological knowledge C Peñaherrera-Palma, I van Putten, YV Karpievitch, S Frusher, ... Biological Conservation 225, 197-207, 2018 | 35 | 2018 |
| Novel elements of the chondrocyte stress response identified using an in vitro model of mouse cartilage degradation R Wilson, SB Golub, L Rowley, C Angelucci, YV Karpievitch, JF Bateman, ... Journal of proteome research 15 (3), 1033-1050, 2016 | 32 | 2016 |
| Aberrant cell migration contributes to defective airway epithelial repair in childhood wheeze T Iosifidis, EN Sutanto, AG Buckley, L Coleman, EE Gill, AH Lee, KM Ling, ... JCI insight 5 (7), 2020 | 23 | 2020 |
| Ivacaftor and airway inflammation in preschool children with cystic fibrosis P McNally, D Butler, YV Karpievitch, B Linnane, S Ranganathan, SM Stick, ... American Journal of Respiratory and Critical Care Medicine 204 (5), 605-608, 2021 | 15 | 2021 |
| mGrid: A load-balanced distributed computing environment for the remote execution of the user-defined Matlab code YV Karpievitch, JS Almeida BMC bioinformatics 7, 1-12, 2006 | 12 | 2006 |
Richard D SmithChief Scientist and Battelle Fellow, Biological Sciences Division, PNNL; retired 2/2024在 pnnl.gov 的电子邮件经过验证
