| Repbase Update, a database of repetitive elements in eukaryotic genomes W Bao, KK Kojima, O Kohany Mobile Dna 6, 1-6, 2015 | 2371 | 2015 |
| Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs RE Green, EL Braun, J Armstrong, D Earl, N Nguyen, G Hickey, ... Science 346 (6215), 1254449, 2014 | 369 | 2014 |
| Next generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust D Cantu, M Govindarajulu, A Kozik, M Wang, X Chen, KK Kojima, J Jurka, ... PloS one 6 (8), e24230, 2011 | 215 | 2011 |
| Families of transposable elements, population structure and the origin of species J Jurka, W Bao, KK Kojima Biology direct 6, 1-16, 2011 | 132 | 2011 |
| Telomere-specific non-LTR retrotransposons and telomere maintenance in the silkworm, Bombyx mori H Fujiwara, M Osanai, T Matsumoto, KK Kojima Chromosome Research 13, 455-467, 2005 | 132 | 2005 |
| Cross-genome screening of novel sequence-specific non-LTR retrotransposons: various multicopy RNA genes and microsatellites are selected as targets KK Kojima, H Fujiwara Molecular biology and evolution 21 (2), 207-217, 2004 | 109 | 2004 |
| Structural and sequence diversity of eukaryotic transposable elements KK Kojima Genes & Genetic Systems 94 (6), 233-252, 2019 | 97 | 2019 |
| Long-term inheritance of the 28S rDNA-specific retrotransposon R2 KK Kojima, H Fujiwara Molecular biology and evolution 22 (11), 2157-2165, 2005 | 96 | 2005 |
| Human transposable elements in Repbase: genomic footprints from fish to humans KK Kojima Mobile DNA 9 (1), 2, 2018 | 95 | 2018 |
| Identification and characterization of the telomerase reverse transcriptase of Bombyx mori (silkworm) and Tribolium castaneum (flour beetle) M Osanai, KK Kojima, R Futahashi, S Yaguchi, H Fujiwara Gene 376 (2), 281-289, 2006 | 87 | 2006 |
| Evolution of target specificity in R1 clade non-LTR retrotransposons KK Kojima, H Fujiwara Molecular biology and evolution 20 (3), 351-361, 2003 | 79 | 2003 |
| Multiple lineages of ancient CR1 retroposons shaped the early genome evolution of amniotes A Suh, G Churakov, MP Ramakodi, RN Platt, J Jurka, KK Kojima, ... Genome biology and evolution 7 (1), 205-217, 2015 | 64 | 2015 |
| Crypton transposons: identification of new diverse families and ancient domestication events KK Kojima, J Jurka Mobile DNA 2 (1), 12, 2011 | 62 | 2011 |
| Systematic survey for novel types of prokaryotic retroelements based on gene neighborhood and protein architecture KK Kojima, M Kanehisa Molecular biology and evolution 25 (7), 1395-1404, 2008 | 59 | 2008 |
| Identification of rDNA-specific non-LTR retrotransposons in Cnidaria KK Kojima, K Kuma, H Toh, H Fujiwara Molecular biology and evolution 23 (10), 1984-1993, 2006 | 55 | 2006 |
| Eukaryotic translational coupling in UAAUG stop-start codons for the bicistronic RNA translation of the non-long terminal repeat retrotransposon SART1 KK Kojima, T Matsumoto, H Fujiwara Molecular and Cellular Biology 25 (17), 7675-7686, 2005 | 52 | 2005 |
| Essential motifs in the 3'untranslated region required for retrotransposition and the precise start of reverse transcription in non-long-terminal-repeat retrotransposon SART1 M Osanai, H Takahashi, KK Kojima, M Hamada, H Fujiwara Molecular and cellular biology 24 (18), 7902, 2004 | 47 | 2004 |
| An extraordinary retrotransposon family encoding dual endonucleases KK Kojima, H Fujiwara Genome research 15 (8), 1106-1117, 2005 | 42 | 2005 |
| Evolution and gene capture in ancient endogenous retroviruses-insights from the crocodilian genomes AY Chong, KK Kojima, J Jurka, DA Ray, AFA Smit, SR Isberg, J Gongora Retrovirology 11, 1-15, 2014 | 33 | 2014 |
| Whole chromosome elimination and chromosome terminus elimination both contribute to somatic differentiation in Taiwanese hagfish Paramyxine sheni NF Kojima, KK Kojima, S Kobayakawa, N Higashide, C Hamanaka, ... Chromosome research 18, 383-400, 2010 | 33 | 2010 |
