| QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects E Meglécz, C Costedoat, V Dubut, A Gilles, T Malausa, N Pech, JF Martin Bioinformatics 26 (3), 403-404, 2010 | 700 | 2010 |
| Underestimation of species richness in Neotropical frogs revealed by mtDNA analyses A Fouquet, A Gilles, M Vences, C Marty, M Blanc, NJ Gemmell PLoS one 2 (10), e1109, 2007 | 657 | 2007 |
| Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing A Gilles, E Meglécz, N Pech, S Ferreira, T Malausa, JF Martin BMC genomics 12, 1-11, 2011 | 464 | 2011 |
| High‐throughput microsatellite isolation through 454 GS‐FLX Titanium pyrosequencing of enriched DNA libraries T Malausa, A Gilles, E Meglécz, H Blanquart, S Duthoy, C Costedoat, ... Molecular Ecology Resources 11 (4), 638-644, 2011 | 401 | 2011 |
| Evidence of en bloc duplication in vertebrate genomes L Abi-Rached, A Gilles, T Shiina, P Pontarotti, H Inoko Nature genetics 31 (1), 100-105, 2002 | 300 | 2002 |
| Revealing cryptic diversity using molecular phylogenetics and phylogeography in frogs of the Scinax ruber and Rhinella margaritifera species groups A Fouquet, M Vences, MD Salducci, A Meyer, C Marty, M Blanc, A Gilles Molecular phylogenetics and Evolution 43 (2), 567-582, 2007 | 223 | 2007 |
| QDD version 3.1: A user‐friendly computer program for microsatellite selection and primer design revisited: Experimental validation of variables determining genotyping success rate E Meglécz, N Pech, A Gilles, V Dubut, P Hingamp, A Trilles, R Grenier, ... Molecular ecology resources 14 (6), 1302-1313, 2014 | 215 | 2014 |
| Multiple quaternary refugia in the eastern Guiana Shield revealed by comparative phylogeography of 12 frog species A Fouquet, BP Noonan, MT Rodrigues, N Pech, A Gilles, NJ Gemmell Systematic Biology 61 (3), 461, 2012 | 159 | 2012 |
| Mitochondrial phylogeny of the European cyprinids: implications for their systematics, reticulate evolution, and colonization time A Gilles, G Lecointre, E Faure, R Chappaz, G Brun Molecular phylogenetics and evolution 10 (1), 132-143, 1998 | 150 | 1998 |
| FIGENIX: intelligent automation of genomic annotation: expertise integration in a new software platform P Gouret, V Vitiello, N Balandraud, A Gilles, P Pontarotti, EGJ Danchin BMC bioinformatics 6, 1-21, 2005 | 144 | 2005 |
| A co-evolution perspective of the TNFSF and TNFRSF families in the immune system Y Collette, A Gilles, P Pontarotti, D Olive Trends in immunology 24 (7), 387-394, 2003 | 144 | 2003 |
| Partial combination applied to phylogeny of European cyprinids using the mitochondrial control region A Gilles, G Lecointre, A Miquelis, M Loerstcher, R Chappaz, G Brun Molecular Phylogenetics and Evolution 19 (1), 22-33, 2001 | 142 | 2001 |
| Phylogenetic relationships of Eurasian and American cyprinids using cytochrome b sequences C Cunha, N Mesquita, TE Dowling, A Gilles, MM Coelho Journal of Fish Biology 61 (4), 929-944, 2002 | 122 | 2002 |
| A PCR‐based method for diet analysis in freshwater organisms using 18S rDNA barcoding on faeces E Corse, C Costedoat, R Chappaz, N Pech, JF MARTIN, A Gilles Molecular Ecology Resources 10 (1), 96-108, 2010 | 114 | 2010 |
| Insight Into the Origin of Endemic Mediterranean Ichthyofauna: Phylogeography of Chondrostoma Genus (Teleostei, Cyprinidae) JD Durand, PG Bianco, J Laroche, A Gilles Journal of Heredity 94 (4), 315-328, 2003 | 106 | 2003 |
| Phylogeography of the vairone (Leuciscus souffia, Risso 1826) in Central Europe W Salzburger, A Brandstätter, A Gilles, W Parson, M Hempel, ... Molecular Ecology 12 (9), 2371-2386, 2003 | 90 | 2003 |
| Chaetognath transcriptome reveals ancestral and unique features among bilaterians F Marlétaz, A Gilles, X Caubit, Y Perez, C Dossat, S Samain, G Gyapay, ... Genome Biology 9, 1-18, 2008 | 82 | 2008 |
| Mitochondrial DNA sequence diversity in a sedentary population from Egypt A Stevanovitch, A Gilles, E Bouzaid, R Kefi, F Paris, RP Gayraud, ... Annals of human genetics 68 (1), 23-39, 2004 | 77 | 2004 |
| Novelties in hybrid zones: crossroads between population genomic and ecological approaches C Costedoat, N Pech, R Chappaz, A Gilles PLoS One 2 (4), e357, 2007 | 70 | 2007 |
| Evolution of mosaic hybrid zone between invasive and endemic species of Cyprinidae through space and time C Costedoat, N Pech, MD Salducci, R Chappaz, A Gilles Biological Journal of the Linnean Society 85 (2), 135-155, 2005 | 62 | 2005 |
