CausalTAB: the PSI-MITAB 2.8 updated format for signalling data representation and dissemination L Perfetto, ML Acencio, G Bradley, G Cesareni, N Del Toro, D Fazekas, ... Bioinformatics 35 (19), 3779-3785, 2019 | 32 | 2019 |
Boolean function metrics can assist modelers to check and choose logical rules J Zobolas, PT Monteiro, M Kuiper, Å Flobak Journal of Theoretical Biology, 111025, 2022 | 7 | 2022 |
CausalBuilder: bringing the MI2CAST causal interaction annotation standard to the curator V Touré, J Zobolas, M Kuiper, S Vercruysse Database 2021, baaa107, 2021 | 7 | 2021 |
VSM-box: general-purpose interface for biocuration and knowledge representation S Vercruysse, J Zobolas, V Touré, MK Andersen, M Kuiper Preprints, 2020 | 6 | 2020 |
UniBioDicts: Unified access to biological dictionaries J Zobolas, V Touré, M Kuiper, S Vercruysse Bioinformatics 37 (1), 143-144, 2020 | 5 | 2020 |
IIb‐RAD‐sequencing coupled with random forest classification indicates regional population structuring and sex‐specific differentiation in salmon lice (Lepeophtheirus salmonis) P Guragain, AS Båtnes, J Zobolas, Y Olsen, AM Bones, P Winge Ecology and Evolution 12 (4), e8809, 2022 | 4 | 2022 |
Tutorial on survival modeling with applications to omics data Z Zhao, J Zobolas, M Zucknick, T Aittokallio Bioinformatics 40 (3), btae132, 2024 | 3* | 2024 |
Fine tuning a logical model of cancer cells to predict drug synergies: combining manual curation and automated parameterization Å Flobak, J Zobolas, M Vazquez, TS Steigedal, L Thommesen, ... Frontiers in Systems Biology 3, 1252961, 2023 | 2* | 2023 |
emba: R package for analysis and visualization of biomarkers in boolean model ensembles J Zobolas, M Kuiper, Å Flobak Journal of open source software 5 (53), 2583, 2020 | 2 | 2020 |
Software implementations allowing new approaches toward data analysis, modeling and curation of biological knowledge for Systems Medicine J Zobolas NTNU, 2021 | 1 | 2021 |
Linking PubDictionaries with UniBioDicts to support Community Curation J Zobolas, JD Kim, M Kuiper, S Vercruysse BioHackrXiv, 2020 | 1 | 2020 |
A Large-Scale Neutral Comparison Study of Survival Models on Low-Dimensional Data L Burk, J Zobolas, B Bischl, A Bender, MN Wright, R Sonabend arXiv preprint arXiv:2406.04098, 2024 | | 2024 |
Survival modeling in mlr3 using Bayesian Additive Regression Trees (BART) Demonstrate use of survival BART on the lung dataset via mlr3proba and distr6. J Zobolas | | 2023 |