| Calypso: a user-friendly web-server for mining and visualizing microbiome–environment interactions M Zakrzewski, C Proietti, JJ Ellis, S Hasan, MJ Brion, B Berger, L Krause Bioinformatics 33 (5), 782-783, 2016 | 633 | 2016 |
| The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts TD Ainsworth, L Krause, T Bridge, G Torda, JB Raina, M Zakrzewski, ... The ISME journal 9 (10), 2261, 2015 | 549 | 2015 |
| EDGAR: a software framework for the comparative analysis of prokaryotic genomes J Blom, SP Albaum, D Doppmeier, A Pühler, FJ Vorhölter, M Zakrzewski, ... Bmc Bioinformatics 10 (1), 154, 2009 | 458 | 2009 |
| Comparative and joint analysis of two metagenomic datasets from a biogas fermenter obtained by 454-pyrosequencing S Jaenicke, C Ander, T Bekel, R Bisdorf, M Dröge, KH Gartemann, ... PLoS One 6 (1), e14519, 2011 | 288 | 2011 |
| Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing M Zakrzewski, A Goesmann, S Jaenicke, S Jünemann, F Eikmeyer, ... Journal of biotechnology 158 (4), 248-258, 2012 | 252 | 2012 |
| Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradation A Hanreich, U Schimpf, M Zakrzewski, A Schlüter, D Benndorf, R Heyer, ... Systematic and applied microbiology 36 (5), 330-338, 2013 | 216 | 2013 |
| Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions Y Stolze*, M Zakrzewski*, I Maus, F Eikmeyer, S Jaenicke, N Rottmann, ... Biotechnology for biofuels 8 (1), 14, 2015 | 191 | 2015 |
| Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes L Ausec*, M Zakrzewski*, A Goesmann, A Schlüter, I Mandic-Mulec PloS one 6 (10), e25724, 2011 | 170 | 2011 |
| Impact of experimental hookworm infection on the human gut microbiota C Cantacessi, P Giacomin, J Croese, M Zakrzewski, J Sotillo, L McCann, ... The Journal of infectious diseases 210 (9), 1431-1434, 2014 | 160 | 2014 |
| Vitamin D and the gut microbiome: a systematic review of in vivo studies M Waterhouse, B Hope, L Krause, M Morrison, MM Protani, M Zakrzewski, ... European journal of nutrition, 1-16, 2018 | 153 | 2018 |
| Characterization of microbial biofilms in a thermophilic biogas system by high‐throughput metagenome sequencing A Rademacher, M Zakrzewski, A Schlüter, M Schönberg, ... FEMS microbiology ecology 79 (3), 785-799, 2012 | 146 | 2012 |
| Metagenome analyses reveal the influence of the inoculant Lactobacillus buchneri CD034 on the microbial community involved in grass ensiling FG Eikmeyer, P Köfinger, A Poschenel, S Jünemann, M Zakrzewski, ... Journal of biotechnology 167 (3), 334-343, 2013 | 129 | 2013 |
| Experimental hookworm infection and escalating gluten challenges are associated with increased microbial richness in celiac subjects P Giacomin, M Zakrzewski, J Croese, X Su, J Sotillo, L McCann, ... Scientific reports 5, 13797, 2015 | 113 | 2015 |
| NLRP1 restricts butyrate producing commensals to exacerbate inflammatory bowel disease H Tye, CH Yu, LA Simms, MR de Zoete, ML Kim, M Zakrzewski, ... Nature communications 9 (1), 3728, 2018 | 105 | 2018 |
| Scabies Mites Alter the Skin Microbiome and Promote Growth of Opportunistic Pathogens in a Porcine Model PM Swe, M Zakrzewski, A Kelly, L Krause, K Fischer PLoS neglected tropical diseases 8 (5), e2897, 2014 | 100 | 2014 |
| Bacterial Diversity of Diabetic Foot Ulcers: Current Status and Future Prospectives F Sadeghpour Heravi, M Zakrzewski, K Vickery, D G Armstrong, H Hu Journal of clinical medicine 8 (11), 1935, 2019 | 93 | 2019 |
| Pyrosequencing reveals transient cystic fibrosis lung microbiome changes with intravenous antibiotics DJ Smith*, AC Badrick*, M Zakrzewski, L Krause, SC Bell, GJ Anderson, ... European Respiratory Journal, erj02030-2013, 2014 | 92 | 2014 |
| Mapping the virome in wild-caught Aedes aegypti from Cairns and Bangkok M Zakrzewski, G Rašić, J Darbro, L Krause, YS Poo, I Filipović, R Parry, ... Scientific reports 8 (1), 4690, 2018 | 84 | 2018 |
| Host DNA depletion efficiency of microbiome DNA enrichment methods in infected tissue samples FS Heravi, M Zakrzewski, K Vickery, H Hu Journal of Microbiological Methods 170, 105856, 2020 | 81 | 2020 |
| Changes in duodenal tissue-associated microbiota following hookworm infection and consecutive gluten challenges in humans with coeliac disease P Giacomin, M Zakrzewski, TP Jenkins, X Su, R Al-Hallaf, J Croese, ... Scientific reports 6, 36797, 2016 | 81 | 2016 |
