| Towards complete and error-free genome assemblies of all vertebrate species A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ... Nature 592 (7856), 737-746, 2021 | 1590 | 2021 |
| The Genome of the Sea Urchin Strongylocentrotus purpuratus E Sodergren, GM Weinstock, EH Davidson, RA Cameron, RA Gibbs, ... Science 314 (5801), 941-952, 2006 | 1260 | 2006 |
| A draft human pangenome reference WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ... Nature 617 (7960), 312-324, 2023 | 376 | 2023 |
| Promoter regions of many neural-and nutrition-related genes have experienced positive selection during human evolution R Haygood, O Fedrigo, B Hanson, KD Yokoyama, G Wray Nature Precedings, 1-1, 2007 | 362 | 2007 |
| Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells I Gupta, PG Collier, B Haase, A Mahfouz, A Joglekar, T Floyd, ... Nature biotechnology 36 (12), 1197-1202, 2018 | 290 | 2018 |
| Six reference-quality genomes reveal evolution of bat adaptations D Jebb, Z Huang, M Pippel, GM Hughes, K Lavrichenko, P Devanna, ... Nature 583 (7817), 578-584, 2020 | 244 | 2020 |
| Reading frame correction by targeted genome editing restores dystrophin expression in cells from Duchenne muscular dystrophy patients DG Ousterout, P Perez-Pinera, PI Thakore, AM Kabadi, MT Brown, X Qin, ... Molecular Therapy 21 (9), 1718-1726, 2013 | 230 | 2013 |
| Haplotype-resolved assembly of diploid genomes without parental data H Cheng, ED Jarvis, O Fedrigo, KP Koepfli, L Urban, NJ Gemmell, H Li Nature Biotechnology 40 (9), 1332-1335, 2022 | 208 | 2022 |
| Phylogenetic relationships among the major lineages of modern elasmobranchs GJP Naylor, JA Ryburn, O Fedrigo, JA Lopez Reproductive biology and phylogeny 3 (1), 25, 2005 | 182 | 2005 |
| The earth BioGenome project 2020: Starting the clock HA Lewin, S Richards, E Lieberman Aiden, ML Allende, JM Archibald, ... Proceedings of the National Academy of Sciences 119 (4), e2115635118, 2022 | 178 | 2022 |
| The era of reference genomes in conservation genomics G Formenti, K Theissinger, C Fernandes, I Bista, A Bombarely, C Bleidorn, ... Trends in ecology & evolution 37 (3), 197-202, 2022 | 167 | 2022 |
| Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection Y Shibata, NC Sheffield, O Fedrigo, CC Babbitt, M Wortham, AK Tewari, ... PLoS genetics 8 (6), e1002789, 2012 | 160 | 2012 |
| A spatially resolved brain region-and cell type-specific isoform atlas of the postnatal mouse brain A Joglekar, A Prjibelski, A Mahfouz, P Collier, S Lin, AK Schlusche, ... Nature Communications 12 (1), 463, 2021 | 143 | 2021 |
| Contrasts between adaptive coding and noncoding changes during human evolution R Haygood, CC Babbitt, O Fedrigo, GA Wray Proceedings of the National Academy of Sciences 107 (17), 7853-7857, 2010 | 135 | 2010 |
| Population genomics of the critically endangered kākāpō N Dussex, T Van Der Valk, HE Morales, CW Wheat, D Díez-del-Molino, ... Cell Genomics 1 (1), 2021 | 132 | 2021 |
| Both noncoding and protein-coding RNAs contribute to gene expression evolution in the primate brain CC Babbitt, O Fedrigo, AD Pfefferle, AP Boyle, JE Horvath, TS Furey, ... Genome biology and evolution 2, 67-79, 2010 | 127 | 2010 |
| Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C ZN Kronenberg, A Rhie, S Koren, GT Concepcion, P Peluso, KM Munson, ... Nature Communications 12 (1), 1935, 2021 | 119 | 2021 |
| Semi-automated assembly of high-quality diploid human reference genomes ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ... Nature 611 (7936), 519-531, 2022 | 116 | 2022 |
| Phylogeny of sharks of the family Triakidae (Carcharhiniformes) and its implications for the evolution of carcharhiniform placental viviparity JA López, JA Ryburn, O Fedrigo, GJP Naylor Molecular Phylogenetics and Evolution 40 (1), 50-60, 2006 | 105 | 2006 |
| Platypus and echidna genomes reveal mammalian biology and evolution Y Zhou, L Shearwin-Whyatt, J Li, Z Song, T Hayakawa, D Stevens, ... Nature 592 (7856), 756-762, 2021 | 104 | 2021 |
