The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics LK Pino, BC Searle, JG Bollinger, B Nunn, B MacLean, MJ MacCoss Mass spectrometry reviews 39 (3), 229-244, 2020 | 564 | 2020 |
Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction RM Morris, BL Nunn, C Frazar, DR Goodlett, YS Ting, G Rocap The ISME journal 4 (5), 673-685, 2010 | 262 | 2010 |
Physiological responses of a Southern Ocean diatom to complex future ocean conditions PW Boyd, PW Dillingham, CM McGraw, EA Armstrong, CE Cornwall, ... Nature Climate Change 6 (2), 207-213, 2016 | 195 | 2016 |
Metabolomics and proteomics reveal impacts of chemically mediated competition on marine plankton KL Poulson-Ellestad, CM Jones, J Roy, MR Viant, FM Fernández, ... Proceedings of the national academy of sciences 111 (24), 9009-9014, 2014 | 134 | 2014 |
Shotgun proteomics reveals physiological response to ocean acidification in Crassostrea gigas E Timmins-Schiffman, WD Coffey, W Hua, BL Nunn, GH Dickinson, ... BMC genomics 15, 1-18, 2014 | 126 | 2014 |
Detection of hydroxamate siderophores in coastal and Sub-Antarctic waters off the South Eastern Coast of New Zealand I Velasquez, BL Nunn, E Ibisanmi, DR Goodlett, KA Hunter, SG Sander Marine Chemistry 126 (1-4), 97-107, 2011 | 108 | 2011 |
What is the oxygen exposure time of laterally transported organic matter along the Washington margin? RG Keil, AF Dickens, T Arnarson, BL Nunn, AH Devol Marine Chemistry 92 (1-4), 157-165, 2004 | 96 | 2004 |
Diatom proteomics reveals unique acclimation strategies to mitigate Fe limitation BL Nunn, JF Faux, AA Hippmann, MT Maldonado, HR Harvey, ... PloS one 8 (10), e75653, 2013 | 93 | 2013 |
Sulfur oxidizers dominate carbon fixation at a biogeochemical hot spot in the dark ocean TE Mattes, BL Nunn, KT Marshall, G Proskurowski, DS Kelley, OE Kawka, ... The ISME journal 7 (12), 2349-2360, 2013 | 76 | 2013 |
Critical decisions in metaproteomics: achieving high confidence protein annotations in a sea of unknowns E Timmins-Schiffman, DH May, M Mikan, M Riffle, C Frazar, HR Harvey, ... The ISME journal 11 (2), 309-314, 2017 | 73 | 2017 |
Progress and challenges in ocean metaproteomics and proposed best practices for data sharing MA Saito, EM Bertrand, ME Duffy, DA Gaylord, NA Held, WJ Hervey IV, ... Journal of proteome research 18 (4), 1461-1476, 2019 | 71 | 2019 |
Deciphering diatom biochemical pathways via whole-cell proteomics BL Nunn, JR Aker, SA Shaffer, Y Tsai, RF Strzepek, PW Boyd, ... Aquatic Microbial Ecology 55 (3), 241-253, 2009 | 65 | 2009 |
MetaGOmics: a web-based tool for peptide-centric functional and taxonomic analysis of metaproteomics data M Riffle, DH May, E Timmins-Schiffman, MP Mikan, D Jaschob, WS Noble, ... Proteomes 6 (1), 2, 2017 | 56 | 2017 |
Tandem mass spectrometry investigation of ADP-ribosylated kemptide SM Hengel, SA Shaffer, BL Nunn, DR Goodlett Journal of the American Society for Mass Spectrometry 20 (3), 477-483, 2011 | 54 | 2011 |
An alignment-free “metapeptide” strategy for metaproteomic characterization of microbiome samples using shotgun metagenomic sequencing DH May, E Timmins-Schiffman, MP Mikan, HR Harvey, E Borenstein, ... Journal of proteome research 15 (8), 2697-2705, 2016 | 50 | 2016 |
Identifying and tracking proteins through the marine water column: Insights into the inputs and preservation mechanisms of protein in sediments EK Moore, BL Nunn, DR Goodlett, HR Harvey Geochimica et cosmochimica acta 83, 324-359, 2012 | 49 | 2012 |
Marine proteomics BL Nunn, AT Timperman Marine Ecology Progress Series 332, 281-289, 2007 | 49 | 2007 |
Proteomics of Colwellia psychrerythraea at subzero temperatures – a life with limited movement, flexible membranes and vital DNA repair BL Nunn, KV Slattery, KA Cameron, E Timmins‐Schiffman, K Junge Environmental microbiology 17 (7), 2319-2335, 2015 | 45 | 2015 |
Disseminating metaproteomic informatics capabilities and knowledge using the Galaxy-P framework C Blank, C Easterly, B Gruening, J Johnson, CA Kolmeder, P Kumar, ... Proteomes 6 (1), 7, 2018 | 43 | 2018 |
Acquisition of Iron by Alkaliphilic Bacillus Species DGG McMillan, I Velasquez, BL Nunn, DR Goodlett, KA Hunter, I Lamont, ... Applied and Environmental Microbiology 76 (20), 6955-6961, 2010 | 40 | 2010 |