A community effort to assess and improve drug sensitivity prediction algorithms WK Costello JC, Heiser LM, Georgii E, Gönen M, Menden MP, Wang NJ, Bansal M ... Nature Biotechnology, 32(12):1202-1212., 2014 | 767 | 2014 |
Identification of overlapping community structure in complex networks using fuzzy c-means clustering S Zhang*, RS Wang, XS Zhang Physica A: Statistical Mechanics and its Applications 374 (1), 483-490, 2007 | 691 | 2007 |
Quantitative function for community detection Z Li^, S Zhang^, RS Wang, XS Zhang, L Chen Physical Review E 77, 036109, 2008 | 464 | 2008 |
Discovery of multi-dimensional modules by integrative analysis of cancer genomic data S Zhang, CC Liu, W Li, H Shen, PW Laird, XJ Zhou Nucleic Acids Research (2012), 40:9379-9391., 2012 | 375 | 2012 |
A community computational challenge to predict the activity of pairs of compounds M Bansal, J Yang, C Karan, MP Menden, JC Costello, H Tang, G Xiao, ... Nature Biotechnology, 32(12):1213-1222., 2014 | 323 | 2014 |
A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules S Zhang*, Q Li, J Liu, XJ Zhou* Bioinformatics 27 (13), i401-i409, 2011 | 258 | 2011 |
Inferring causal molecular networks: empirical assessment through a community-based effort SM Hill, ..., Z Liu, W Min, S Zhang, ..., et al. Nature Methods (2016), 13(4):310-318., 2016 | 244 | 2016 |
Deciphering spatial domains from spatially resolved transcriptomics with an adaptive graph attention auto-encoder K Dong, S Zhang* Nature Communications (2022), 13:1739., 2022 | 228 | 2022 |
Uncovering fuzzy community structure in complex networks S Zhang, RS Wang, XS Zhang Physical Review E 76 (4), 046103, 2007 | 168 | 2007 |
Efficient methods for identifying mutated driver pathways in cancer J Zhao, S Zhang*, LY Wu, XS Zhang Bioinformatics (2012), 28:2940-2947., 2012 | 164 | 2012 |
Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open … J Guinney, T Wang, TD Laajala, KK Winner, JC Bare, EC Neto, SA Khan, ... The Lancet Oncology, (2016), doi: 10.1016/S1470-2045(16)30560-5., 2016 | 161 | 2016 |
Comparative pan-cancer DNA methylation analysis reveals cancer common and specific patterns X Yang, L Gao*, S Zhang* Briefings in Bioinformatics (2017), 18(5), 761–773. doi:10.1093/bib/bbw063., 2017 | 149 | 2017 |
Identifying multi-layer gene regulatory modules from multi-dimensional genomic data W Li^, S Zhang^, CC Liu, XJ Zhou Bioinformatics (2012), 28:2458-2466., 2012 | 149 | 2012 |
Comparison of computational methods for imputing single-cell RNA-sequencing data L Zhang, S Zhang* IEEE/ACM Transactions on Computational Biology and Bioinformatics (2020), 17 …, 2020 | 143 | 2020 |
Alignment of molecular networks by integer quadratic programming Z Li^, S Zhang^, Y Wang, XS Zhang, L Chen Bioinformatics 23 (13), 1631-1639, 2007 | 142 | 2007 |
Discovering functions and revealing mechanisms at molecular level from biological networks S Zhang, G Jin, XS Zhang, L Chen Proteomics 7 (16), 2856-2869, 2007 | 139 | 2007 |
DrugE-Rank: improving drug-target interaction prediction of new candidate drugs or targets by ensemble learning to rank Q Yuan, J Gao, D Wu, S Zhang, H Mamitsuka, S Zhu Bioinformatics (ISMB2016), 32(12): i18-i27., 2016 | 133 | 2016 |
Prediction of human population responses to toxic compounds by a collaborative competition. F Eduati, LM Mangravite, T Wang, H Tang, ......, S Zhang, J Zhao, ......, ... Nature Biotechnology, 33(9):933-940., 2015 | 121 | 2015 |
Breast tumor subgroups reveal diverse clinical prognostic power Z Liu, XS Zhang, S Zhang* Scientific Reports 4, 4002., 2014 | 114 | 2014 |
Discovery of co-occurring driver pathways in cancer J Zhang*, LY Wu, XS Zhang, S Zhang* BMC Bioinformatics 15 (1), 271, 2014 | 102 | 2014 |