Superresolution imaging of ribosomes and RNA polymerase in live Escherichia coli cells S Bakshi, A Siryaporn, M Goulian, JC Weisshaar Molecular microbiology 85 (1), 21-38, 2012 | 492 | 2012 |
The spatial biology of transcription and translation in rapidly growing Escherichia coli S Bakshi, H Choi, JC Weisshaar Frontiers in microbiology 6, 636, 2015 | 125 | 2015 |
Time‐dependent effects of transcription‐ and translation‐halting drugs on the spatial distributions of the Escherichia coli chromosome and ribosomes S Bakshi, H Choi, J Mondal, JC Weisshaar Molecular microbiology 94 (4), 871-887, 2014 | 115 | 2014 |
Bacterial persisters are a stochastically formed subpopulation of low-energy cells S Manuse, Y Shan, SJ Canas-Duarte, S Bakshi, WS Sun, H Mori, ... PLoS biology 19 (4), e3001194, 2021 | 114 | 2021 |
Tracking bacterial lineages in complex and dynamic environments with applications for growth control and persistence S Bakshi, E Leoncini, C Baker, SJ Cañas-Duarte, B Okumus, J Paulsson Nature Microbiology 6 (6), 783-791, 2021 | 85 | 2021 |
Localized permeabilization of E. coli membranes by the antimicrobial peptide Cecropin A N Rangarajan, S Bakshi, JC Weisshaar Biochemistry 52 (38), 6584-6594, 2013 | 82 | 2013 |
Subdiffraction-limit study of Kaede diffusion and spatial distribution in live Escherichia coli S Bakshi, BP Bratton, JC Weisshaar Biophysical journal 101 (10), 2535-2544, 2011 | 81 | 2011 |
Partitioning of RNA polymerase activity in live Escherichia coli from analysis of single-molecule diffusive trajectories S Bakshi, RM Dalrymple, W Li, H Choi, JC Weisshaar Biophysical journal 105 (12), 2676-2686, 2013 | 68 | 2013 |
Mechanical slowing-down of cytoplasmic diffusion allows in vivo counting of proteins in individual cells B Okumus, D Landgraf, GC Lai, S Bakshi, JC Arias-Castro, S Yildiz, ... Nature communications 7 (1), 11641, 2016 | 65 | 2016 |
Nonperturbative imaging of nucleoid morphology in live bacterial cells during an antimicrobial peptide attack S Bakshi, H Choi, N Rangarajan, KJ Barns, BP Bratton, JC Weisshaar Applied and environmental microbiology 80 (16), 4977-4986, 2014 | 57 | 2014 |
Stochastic antagonism between two proteins governs a bacterial cell fate switch ND Lord, TM Norman, R Yuan, S Bakshi, R Losick, J Paulsson Science 366 (6461), 116-120, 2019 | 54 | 2019 |
Bacterial variability in the mammalian gut captured by a single-cell synthetic oscillator DT Riglar, DL Richmond, L Potvin-Trottier, AA Verdegaal, AD Naydich, ... Nature communications 10 (1), 4665, 2019 | 53 | 2019 |
Quantification of very low-abundant proteins in bacteria using the HaloTag and epi-fluorescence microscopy A Lepore, H Taylor, D Landgraf, B Okumus, S Jaramillo-Riveri, L McLaren, ... Scientific reports 9 (1), 7902, 2019 | 29 | 2019 |
Single-cell microscopy of suspension cultures using a microfluidics-assisted cell screening platform B Okumus, CJ Baker, JC Arias-Castro, GC Lai, E Leoncini, S Bakshi, ... Nature protocols 13 (1), 170-194, 2018 | 29 | 2018 |
Divin: a small molecule inhibitor of bacterial divisome assembly YJ Eun, M Zhou, D Kiekebusch, S Schlimpert, RR Trivedi, S Bakshi, ... Journal of the American Chemical Society 135 (26), 9768-9776, 2013 | 19 | 2013 |
Challenges of analysing stochastic gene expression in bacteria using single-cell time-lapse experiments G Hardo, S Bakshi Essays in Biochemistry 65 (1), 67-79, 2021 | 17 | 2021 |
Synthetic Micrographs of Bacteria (SyMBac) allows accurate segmentation of bacterial cells using deep neural networks G Hardo, M Noka, S Bakshi BMC biology 20 (1), 263, 2022 | 13 | 2022 |
The context matrix: Navigating biological complexity for advanced biodesign C Moschner, C Wedd, S Bakshi Frontiers in Bioengineering and Biotechnology 10, 954707, 2022 | 6 | 2022 |
Structural and functional analyses of nematode-derived antimicrobial peptides support the occurrence of direct mechanisms of worm-microbiota interactions J Rooney, E Rivera-de-Torre, R Li, K Mclean, DRG Price, AJ Nisbet, ... Computational and Structural Biotechnology Journal 23, 1522-1533, 2024 | 1 | 2024 |
Single-cell imaging of the lytic phage life cycle dissects the timing and noise in individual infection steps C Wedd, T Yunusov, A Smith, R Li, G Hardo, M Hunter, R Majed, D Fusco, ... bioRxiv, 2024.04. 11.588870, 2024 | 1 | 2024 |