Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project E Birney, JA Stamatoyannopoulos, A Dutta, R Guigó, TR Gingeras, ... Nature 447 (7146), 799-816, 2007 | 6025 | 2007 |
ViennaRNA Package 2.0 R Lorenz, SH Bernhart, C Höner zu Siederdissen, H Tafer, C Flamm, ... Algorithms for molecular biology 6, 1-14, 2011 | 4724 | 2011 |
RNA folding at elementary step resolution C Flamm, W Fontana, IL Hofacker, P Schuster Rna 6 (3), 325-338, 2000 | 420 | 2000 |
The expansion of the metazoan microRNA repertoire J Hertel, M Lindemeyer, K Missal, C Fried, A Tanzer, C Flamm, ... BMC genomics 7, 1-15, 2006 | 380 | 2006 |
Partition function and base pairing probabilities of RNA heterodimers SH Bernhart, H Tafer, U Mückstein, C Flamm, PF Stadler, IL Hofacker Algorithms for Molecular Biology 1, 1-10, 2006 | 344 | 2006 |
Barrier trees of degenerate landscapes C Flamm, IL Hofacker, PF Stadler, MT Wolfinger Oldenbourg Wissenschaftsverlag GmbH 216 (2), 155, 2002 | 243 | 2002 |
Design of multistable RNA molecules C Flamm, IL Hofacker, S Maurer-Stroh, PF Stadler, M Zehl Rna 7 (2), 254-265, 2001 | 220 | 2001 |
SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020 | 212 | 2020 |
Automatic detection of conserved RNA structure elements in complete RNA virus genomes IL Hofacker, M Fekete, C Flamm, MA Huynen, S Rauscher, PE Stolorz, ... Nucleic acids research 26 (16), 3825-3836, 1998 | 186 | 1998 |
Inverse problems in systems biology HW Engl, C Flamm, P Kügler, J Lu, S Müller, P Schuster Inverse Problems 25 (12), 123014, 2009 | 182 | 2009 |
Noisy: identification of problematic columns in multiple sequence alignments AWM Dress, C Flamm, G Fritzsch, S Grünewald, M Kruspe, SJ Prohaska, ... Algorithms for Molecular Biology 3, 1-10, 2008 | 162 | 2008 |
Secondary structure of the 3'-noncoding region of flavivirus genomes: comparative analysis of base pairing probabilities. S Rauscher, C Flamm, CW Mandl, FX Heinz, PF Stadler Rna 3 (7), 779-791, 1997 | 143 | 1997 |
A graph-based toy model of chemistry G Benkö, C Flamm, PF Stadler Journal of Chemical Information and Computer Sciences 43 (4), 1085-1093, 2003 | 140 | 2003 |
The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks R Machné, A Finney, S Müller, J Lu, S Widder, C Flamm Bioinformatics 22 (11), 1406-1407, 2006 | 137 | 2006 |
Efficient computation of RNA folding dynamics MT Wolfinger, WA Svrcek-Seiler, C Flamm, IL Hofacker, PF Stadler Journal of Physics A: Mathematical and General 37 (17), 4731, 2004 | 134 | 2004 |
A generalized model of the repressilator S Müller, J Hofbauer, L Endler, C Flamm, S Widder, P Schuster Journal of mathematical biology 53, 905-937, 2006 | 129 | 2006 |
Folding kinetics of large RNAs M Geis, C Flamm, MT Wolfinger, A Tanzer, IL Hofacker, M Middendorf, ... Journal of molecular biology 379 (1), 160-173, 2008 | 108 | 2008 |
Evolutionary patterns of non-coding RNAs AF Bompfünewerer, C Flamm, C Fried, G Fritzsch, IL Hofacker, ... Theory in Biosciences 123 (4), 301-369, 2005 | 96 | 2005 |
RNAs everywhere: Genome‐wide annotation of structured RNAs R Backofen, SH Bernhart, C Flamm, C Fried, G Fritzsch, J Hackermüller, ... Journal of Experimental Zoology Part B: Molecular and Developmental …, 2007 | 93 | 2007 |
Surveying phylogenetic footprints in large gene clusters: applications to Hox cluster duplications SJ Prohaska, C Fried, C Flamm, GP Wagner, PF Stadler Molecular phylogenetics and evolution 31 (2), 581-604, 2004 | 75 | 2004 |