The B73 maize genome: complexity, diversity, and dynamics PS Schnable, D Ware, RS Fulton, JC Stein, F Wei, S Pasternak, C Liang, ... science 326 (5956), 1112-1115, 2009 | 4548 | 2009 |
Genome sequencing and analysis of the model grass Brachypodium distachyon DNA sequencing and assembly Barry Kerrie 5 Lucas Susan 5 Harmon-Smith ... Nature 463 (7282), 763-768, 2010 | 1898 | 2010 |
The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus) R Ming, S Hou, Y Feng, Q Yu, A Dionne-Laporte, JH Saw, P Senin, ... Nature 452 (7190), 991-996, 2008 | 1248 | 2008 |
Plant transposable elements: where genetics meets genomics C Feschotte, N Jiang, SR Wessler Nature Reviews Genetics 3 (5), 329-341, 2002 | 1220 | 2002 |
LTR_retriever: a highly accurate and sensitive program for identification of long terminal repeat retrotransposons S Ou, N Jiang Plant physiology 176 (2), 1410-1422, 2018 | 800 | 2018 |
Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline S Ou, W Su, Y Liao, K Chougule, JRA Agda, AJ Hellinga, CSB Lugo, ... Genome biology 20, 1-18, 2019 | 735 | 2019 |
Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution JJ Smith, S Kuraku, C Holt, T Sauka-Spengler, N Jiang, MS Campbell, ... Nature genetics 45 (4), 415-421, 2013 | 699 | 2013 |
Pack-MULE transposable elements mediate gene evolution in plants N Jiang, Z Bao, X Zhang, SR Eddy, SR Wessler Nature 431 (7008), 569-573, 2004 | 633 | 2004 |
A retrotransposon-mediated gene duplication underlies morphological variation of tomato fruit H Xiao, N Jiang, E Schaffner, EJ Stockinger, E van der Knaap science 319 (5869), 1527-1530, 2008 | 619 | 2008 |
Origin and evolution of the octoploid strawberry genome PP Edger, TJ Poorten, R VanBuren, MA Hardigan, M Colle, MR McKain, ... Nature genetics 51 (3), 541-547, 2019 | 556 | 2019 |
An active DNA transposon family in rice N Jiang, Z Bao, X Zhang, H Hirochika, SR Eddy, SR McCouch, ... Nature 421 (6919), 163-167, 2003 | 533 | 2003 |
Assessing genome assembly quality using the LTR Assembly Index (LAI) S Ou, J Chen, N Jiang Nucleic acids research 46 (21), e126-e126, 2018 | 502 | 2018 |
Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779 A Vieler, G Wu, CH Tsai, B Bullard, AJ Cornish, C Harvey, IB Reca, ... PLoS genetics 8 (11), e1003064, 2012 | 426 | 2012 |
MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations MS Campbell, MY Law, C Holt, JC Stein, GD Moghe, DE Hufnagel, J Lei, ... Plant physiology 164 (2), 513-524, 2014 | 413 | 2014 |
An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments FA Feltus, J Wan, SR Schulze, JC Estill, N Jiang, AH Paterson Genome research 14 (9), 1812-1819, 2004 | 408 | 2004 |
Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.) R Ming, R VanBuren, Y Liu, M Yang, Y Han, LT Li, Q Zhang, MJ Kim, ... Genome biology 14, 1-11, 2013 | 382 | 2013 |
Pan-genome analysis of 33 genetically diverse rice accessions reveals hidden genomic variations P Qin, H Lu, H Du, H Wang, W Chen, Z Chen, Q He, S Ou, H Zhang, X Li, ... Cell 184 (13), 3542-3558. e16, 2021 | 295 | 2021 |
Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity PP Edger, R VanBuren, M Colle, TJ Poorten, CM Wai, CE Niederhuth, ... Gigascience 7 (2), gix124, 2018 | 240 | 2018 |
Comparative transcriptomics of three Poaceae species reveals patterns of gene expression evolution RM Davidson, M Gowda, G Moghe, H Lin, B Vaillancourt, SH Shiu, ... The Plant Journal 71 (3), 492-502, 2012 | 239 | 2012 |
Integration of Cot analysis, DNA cloning, and high-throughput sequencing facilitates genome characterization and gene discovery DG Peterson, SR Schulze, EB Sciara, SA Lee, JE Bowers, A Nagel, ... Genome Research 12 (5), 795-807, 2002 | 236 | 2002 |