An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 16903 | 2012 |
Integration of biological networks and gene expression data using Cytoscape MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ... Nature protocols 2 (10), 2366-2382, 2007 | 2758 | 2007 |
A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014 | 1941 | 2014 |
The UCSC genome browser database: update 2011 PA Fujita, B Rhead, AS Zweig, AS Hinrichs, D Karolchik, MS Cline, ... Nucleic acids research 39 (suppl_1), D876-D882, 2010 | 1282 | 2010 |
Toil enables reproducible, open source, big biomedical data analyses J Vivian, AA Rao, FA Nothaft, C Ketchum, J Armstrong, A Novak, J Pfeil, ... Nature biotechnology 35 (4), 314-316, 2017 | 1051 | 2017 |
The UCSC Genome Browser database: extensions and updates 2013 LR Meyer, AS Zweig, AS Hinrichs, D Karolchik, RM Kuhn, M Wong, ... Nucleic acids research 41 (D1), D64-D69, 2012 | 905 | 2012 |
The UCSC genome browser database: 2014 update D Karolchik, GP Barber, J Casper, H Clawson, MS Cline, M Diekhans, ... Nucleic acids research 42 (D1), D764-D770, 2014 | 776 | 2014 |
A user's guide to the encyclopedia of DNA elements (ENCODE) RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ... PLoS biology 9 (4), 2011 | 677 | 2011 |
NetAffx: affymetrix probeset annotations G Liu, AE Loraine, R Shigeta, M Cline, J Cheng, SA Chervitz, D Kulp, ... Proceedings of the 2002 ACM symposium on Applied computing, 147-150, 2002 | 645 | 2002 |
Nova regulates brain-specific splicing to shape the synapse J Ule, A Ule, J Spencer, A Williams, JS Hu, M Cline, H Wang, T Clark, ... Nature genetics 37 (8), 844-852, 2005 | 598 | 2005 |
The UCSC genome browser database: 2008 update D Karolchik, RM Kuhn, R Baertsch, GP Barber, H Clawson, M Diekhans, ... Nucleic acids research 36 (suppl_1), D773-D779, 2007 | 597 | 2007 |
RBPmap: a web server for mapping binding sites of RNA-binding proteins I Paz, I Kosti, M Ares Jr, M Cline, Y Mandel-Gutfreund Nucleic acids research 42 (W1), W361-W367, 2014 | 503 | 2014 |
The UCSC Genome Browser database: extensions and updates 2011 TR Dreszer, D Karolchik, AS Zweig, AS Hinrichs, BJ Raney, RM Kuhn, ... Nucleic acids research 40 (D1), D918-D923, 2012 | 422 | 2012 |
Muscleblind-like 2-mediated alternative splicing in the developing brain and dysregulation in myotonic dystrophy K Charizanis, KY Lee, R Batra, M Goodwin, C Zhang, Y Yuan, L Shiue, ... Neuron 75 (3), 437-450, 2012 | 381 | 2012 |
Aberrant alternative splicing and extracellular matrix gene expression in mouse models of myotonic dystrophy H Du, MS Cline, RJ Osborne, DL Tuttle, TA Clark, JP Donohue, MP Hall, ... Nature structural & molecular biology 17 (2), 187-193, 2010 | 381 | 2010 |
Integrated molecular characterization of uterine carcinosarcoma AD Cherniack, H Shen, V Walter, C Stewart, BA Murray, R Bowlby, X Hu, ... Cancer cell 31 (3), 411-423, 2017 | 375 | 2017 |
An encyclopedia of mouse DNA elements (Mouse ENCODE) Mouse ENCODE Consortium, JA Stamatoyannopoulos, M Snyder, ... Genome biology 13, 1-5, 2012 | 372 | 2012 |
ENCODE whole-genome data in the UCSC Genome Browser: update 2012 KR Rosenbloom, TR Dreszer, JC Long, VS Malladi, CA Sloan, BJ Raney, ... Nucleic acids research 40 (D1), D912-D917, 2012 | 329 | 2012 |
The UCSC cancer genomics browser: update 2015 M Goldman, B Craft, T Swatloski, M Cline, O Morozova, M Diekhans, ... Nucleic acids research 43 (D1), D812-D817, 2015 | 301 | 2015 |
Exploring TCGA pan-cancer data at the UCSC cancer genomics browser MS Cline, B Craft, T Swatloski, M Goldman, S Ma, D Haussler, J Zhu Scientific reports 3 (1), 2652, 2013 | 296 | 2013 |