Genome‐wide atlas of transcription during maize development RS Sekhon, H Lin, KL Childs, CN Hansey, CR Buell, N De Leon, ... The Plant Journal 66 (4), 553-563, 2011 | 569 | 2011 |
Insights into the maize pan-genome and pan-transcriptome CN Hirsch, JM Foerster, JM Johnson, RS Sekhon, G Muttoni, ... The Plant Cell 26 (1), 121-135, 2014 | 475 | 2014 |
Transposable elements contribute to activation of maize genes in response to abiotic stress I Makarevitch, AJ Waters, PT West, M Stitzer, CN Hirsch, J Ross-Ibarra, ... PLoS genetics 11 (1), e1004915, 2015 | 377 | 2015 |
Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline S Ou, W Su, Y Liao, K Chougule, JRA Agda, AJ Hellinga, CSB Lugo, ... Genome biology 20 (1), 1-18, 2019 | 330 | 2019 |
An expanded maize gene expression atlas based on RNA sequencing and its use to explore root development SC Stelpflug, RS Sekhon, B Vaillancourt, CN Hirsch, CR Buell, N de Leon, ... The plant genome 9 (1), plantgenome2015.04.0025, 2016 | 270 | 2016 |
Single nucleotide polymorphism discovery in elite North American potato germplasm JP Hamilton, CN Hansey, BR Whitty, K Stoffel, AN Massa, A Van Deynze, ... BMC genomics 12, 1-12, 2011 | 236 | 2011 |
Integration of two diploid potato linkage maps with the potato genome sequence KJ Felcher, JJ Coombs, AN Massa, CN Hansey, JP Hamilton, RE Veilleux, ... PloS one 7 (4), e36347, 2012 | 222 | 2012 |
Marker density and read depth for genotyping populations using genotyping-by-sequencing TM Beissinger, CN Hirsch, RS Sekhon, JM Foerster, JM Johnson, ... Genetics 193 (4), 1073-1081, 2013 | 200 | 2013 |
Retrospective View of North American Potato (Solanum tuberosum L.) Breeding in the 20th and 21st Centuries CN Hirsch, CD Hirsch, K Felcher, J Coombs, D Zarka, A Van Deynze, ... G3: Genes, Genomes, Genetics 3 (6), 1003-1013, 2013 | 197 | 2013 |
RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome Q Li, JI Gent, G Zynda, J Song, I Makarevitch, CD Hirsch, CN Hirsch, ... Proceedings of the National Academy of Sciences 112 (47), 14728-14733, 2015 | 182 | 2015 |
Draft assembly of elite inbred line PH207 provides insights into genomic and transcriptome diversity in maize CN Hirsch, CD Hirsch, AB Brohammer, MJ Bowman, I Soifer, O Barad, ... The Plant Cell 28 (11), 2700-2714, 2016 | 181 | 2016 |
Maize (Zea mays L.) genome diversity as revealed by RNA-sequencing CN Hansey, B Vaillancourt, RS Sekhon, N De Leon, SM Kaeppler, ... PloS one 7 (3), e33071, 2012 | 176 | 2012 |
Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays RS Sekhon, R Briskine, CN Hirsch, CL Myers, NM Springer, CR Buell, ... PloS one 8 (4), e61005, 2013 | 173 | 2013 |
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes MB Hufford, AS Seetharam, MR Woodhouse, KM Chougule, S Ou, J Liu, ... Science 373 (6555), 655-662, 2021 | 161 | 2021 |
Utility of RNA sequencing for analysis of maize reproductive transcriptomes RM Davidson, CN Hansey, M Gowda, KL Childs, H Lin, B Vaillancourt, ... The Plant Genome 4 (3), 2011 | 153 | 2011 |
How the pan-genome is changing crop genomics and improvement R Della Coletta, Y Qiu, S Ou, MB Hufford, CN Hirsch Genome biology 22 (1), 1-19, 2021 | 117 | 2021 |
Spud DB: A resource for mining sequences, genotypes, and phenotypes to accelerate potato breeding CD Hirsch, JP Hamilton, KL Childs, J Cepela, E Crisovan, B Vaillancourt, ... The Plant Genome 7 (1), plantgenome2013.12.0042, 2014 | 105 | 2014 |
Genetic diversity of a maize association population with restricted phenology CN Hansey, JM Johnson, RS Sekhon, SM Kaeppler, N De Leon Crop Science 51 (2), 704-715, 2011 | 104 | 2011 |
The effect of artificial selection on phenotypic plasticity in maize JL Gage, D Jarquin, C Romay, A Lorenz, ES Buckler, S Kaeppler, ... Nature communications 8 (1), 1348, 2017 | 103 | 2017 |
Natural variation for gene expression responses to abiotic stress in maize AJ Waters, I Makarevitch, J Noshay, LT Burghardt, CN Hirsch, CD Hirsch, ... The Plant Journal 89 (4), 706-717, 2017 | 95 | 2017 |