| Artificial intelligence for diagnosis and Gleason grading of prostate cancer: the PANDA challenge W Bulten, K Kartasalo, PHC Chen, P Ström, H Pinckaers, K Nagpal, Y Cai, ... Nature medicine 28 (1), 154-163, 2022 | 317 | 2022 |
| A deep learning algorithm for automatic detection and classification of acute intracranial hemorrhages in head CT scans X Wang, T Shen, S Yang, J Lan, Y Xu, M Wang, J Zhang, X Han NeuroImage: Clinical 32, 102785, 2021 | 98 | 2021 |
| FaceBagNet: Bag-of-local-features model for multi-modal face anti-spoofing T Shen, Y Huang, Z Tong Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern …, 2019 | 95 | 2019 |
| Structure of human steroid 5α-reductase 2 with the anti-androgen drug finasteride Q Xiao, L Wang, S Supekar, T Shen, H Liu, F Ye, J Huang, H Fan, Z Wei, ... Nature communications 11 (1), 5430, 2020 | 74 | 2020 |
| Interpretable RNA foundation model from unannotated data for highly accurate RNA structure and function predictions J Chen, Z Hu, S Sun, Q Tan, Y Wang, Q Yu, L Zong, L Hong, J Xiao, ... arXiv preprint arXiv:2204.00300, 2022 | 49 | 2022 |
| E2Efold-3D: end-to-end deep learning method for accurate de novo RNA 3D structure prediction T Shen, Z Hu, Z Peng, J Chen, P Xiong, L Hong, L Zheng, Y Wang, I King, ... arXiv preprint arXiv:2207.01586, 2022 | 44 | 2022 |
| When homologous sequences meet structural decoys: Accurate contact prediction by tFold in CASP14—(tFold for CASP14 contact prediction) T Shen, J Wu, H Lan, L Zheng, J Pei, S Wang, W Liu, J Huang Proteins: Structure, Function, and Bioinformatics 89 (12), 1901-1910, 2021 | 36 | 2021 |
| Interior tomography in microscopic CT with image reconstruction constrained by full field of view scan at low spatial resolution S Luo, T Shen, Y Sun, J Li, G Li, X Tang Physics in Medicine & biology 63 (7), 075006, 2018 | 18 | 2018 |
| EBM-Fold: fully-differentiable protein folding powered by energy-based models J Wu, S Luo, T Shen, H Lan, S Wang, J Huang arXiv preprint arXiv:2105.04771, 2021 | 10 | 2021 |
| DeepNoise: signal and noise disentanglement based on classifying fluorescent microscopy images via deep learning S Yang, T Shen, Y Fang, X Wang, J Zhang, W Yang, J Huang, X Han Genomics, Proteomics and Bioinformatics 20 (5), 989-1001, 2022 | 5 | 2022 |
| SE (3)-equivariant energy-based models for end-to-end protein folding J Wu, T Shen, H Lan, Y Bian, J Huang bioRxiv, 2021.06. 06.447297, 2021 | 5 | 2021 |
| zPoseScore model for accurate and robust protein-ligand docking pose scoring in CASP15 T Shen, F Liu, Z Wang, J Sun, Y Bu, J Meng, W Chen, Y Mu, W Li, G Zhao, ... Proteins: Structure, Function, and Bioinformatics, 2023 | 4 | 2023 |
| Geometric calibration based on a simple phantom for multi-lens microscopic CT S Luo, H Xu, L Zheng, G Li, X Zhang, T Shen International Journal of Computational Methods 16 (03), 1842015, 2019 | 4 | 2019 |
| Enhancing the protein tertiary structure prediction by multiple sequence alignment generation L Zhang, J Chen, T Shen, Y Li, S Sun arXiv preprint arXiv:2306.01824, 2023 | 3 | 2023 |
| AF2-mutation: adversarial sequence mutations against AlphaFold2 on protein tertiary structure prediction Z Yuan, T Shen, S Xu, L Yu, R Ren, S Sun arXiv preprint arXiv:2305.08929, 2023 | 2 | 2023 |
| tFold-TR: combining deep learning enhanced hybrid potential energy for template-based modeling structure refinement L Zheng, H Lan, T Shen, J Wu, S Wang, W Liu, J Huang arXiv preprint arXiv:2105.04350, 2021 | 2 | 2021 |
| Accurate prediction of antibody function and structure using bio-inspired antibody language model H Jing, Z Gao, S Xu, T Shen, Z Peng, S He, T You, S Ye, W Lin, S Sun Briefings in Bioinformatics 25 (4), bbae245, 2024 | 1 | 2024 |
| CrossBind: Collaborative Cross-Modal Identification of Protein Nucleic-Acid-Binding Residues L Jing, S Xu, Y Wang, Y Zhou, T Shen, Z Ji, H Fang, Z Li, S Sun Proceedings of the AAAI Conference on Artificial Intelligence 38 (3), 2661-2669, 2024 | | 2024 |
| RTM-align: an improved RNA alignment tool with enhanced short sequence performance via post-standardization and fragment alignment Z Qiu, S Xu, J Wei, T Shen, S Sun bioRxiv, 2024.05. 27.595311, 2024 | | 2024 |
