| The role of retrotransposable elements in ageing and age-associated diseases V Gorbunova, A Seluanov, P Mita, W McKerrow, D Fenyö, JD Boeke, ... Nature 596 (7870), 43-53, 2021 | 189 | 2021 |
| SmCL3, a Gastrodermal Cysteine Protease of the Human Blood Fluke Schistosoma mansoni J Dvořák, ST Mashiyama, M Sajid, S Braschi, M Delcroix, EL Schneider, ... PLoS neglected tropical diseases 3 (6), e449, 2009 | 67 | 2009 |
| LINE-1 ORF2p expression is nearly imperceptible in human cancers D Ardeljan, X Wang, M Oghbaie, MS Taylor, D Husband, V Deshpande, ... Mobile dna 11, 1-19, 2020 | 56 | 2020 |
| LINE-1 expression in cancer correlates with p53 mutation, copy number alteration, and S phase checkpoint W McKerrow, X Wang, C Mendez-Dorantes, P Mita, S Cao, M Grivainis, ... Proceedings of the National Academy of Sciences 119 (8), e2115999119, 2022 | 46 | 2022 |
| Proteogenomic data and resources for pan-cancer analysis Y Li, Y Dou, FDV Leprevost, Y Geffen, AP Calinawan, F Aguet, Y Akiyama, ... Cancer cell 41 (8), 1397-1406, 2023 | 33 | 2023 |
| L1EM: a tool for accurate locus specific LINE-1 RNA quantification W McKerrow, D Fenyö Bioinformatics 36 (4), 1167-1173, 2020 | 33 | 2020 |
| RIP-seq reveals LINE-1 ORF1p association with p-body enriched mRNAs EM Briggs, W McKerrow, P Mita, JD Boeke, SK Logan, D Fenyö Mobile DNA 12, 1-13, 2021 | 29 | 2021 |
| Pan-cancer proteogenomics connects oncogenic drivers to functional states Y Li, E Porta-Pardo, C Tokheim, MH Bailey, TM Yaron, V Stathias, ... Cell 186 (18), 3921-3944. e25, 2023 | 25 | 2023 |
| Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation Y Geffen, S Anand, Y Akiyama, TM Yaron, Y Song, JL Johnson, ... Cell 186 (18), 3945-3967. e26, 2023 | 22 | 2023 |
| Integrative multi-omic cancer profiling reveals DNA methylation patterns associated with therapeutic vulnerability and cell-of-origin WW Liang, RJH Lu, RG Jayasinghe, SM Foltz, E Porta-Pardo, Y Geffen, ... Cancer cell 41 (9), 1567-1585. e7, 2023 | 15 | 2023 |
| Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer S Chowdhury, JJ Kennedy, RG Ivey, OD Murillo, N Hosseini, X Song, ... Cell 186 (16), 3476-3498. e35, 2023 | 11 | 2023 |
| LINE-1 retrotransposon expression in cancerous, epithelial and neuronal cells revealed by 5′ single-cell RNA-Seq W McKerrow, L Kagermazova, N Doudican, N Frazzette, EI Kaparos, ... Nucleic acids research 51 (5), 2033-2045, 2023 | 11 | 2023 |
| Proteogenomic insights suggest druggable pathways in endometrial carcinoma Y Dou, L Katsnelson, MA Gritsenko, Y Hu, B Reva, R Hong, YT Wang, ... Cancer cell 41 (9), 1586-1605. e15, 2023 | 8 | 2023 |
| Human transposon insertion profiling by sequencing (TIPseq) to map LINE-1 insertions in single cells W McKerrow, Z Tang, JP Steranka, LM Payer, JD Boeke, D Keefe, ... Philosophical Transactions of the Royal Society B 375 (1795), 20190335, 2020 | 8 | 2020 |
| Characterization and visualization of RNA secondary structure Boltzmann ensemble via information theory L Lin, WH McKerrow, B Richards, C Phonsom, CE Lawrence BMC bioinformatics 19, 1-10, 2018 | 8 | 2018 |
| Pan-cancer proteogenomics characterization of tumor immunity F Petralia, W Ma, TM Yaron, FP Caruso, N Tignor, JM Wang, ... Cell 187 (5), 1255-1277. e27, 2024 | 5 | 2024 |
| LINE-1 expression in cancer correlates with DNA damage response, copy number variation, and cell cycle progression W McKerrow, X Wang, P Mita, S Cao, M Grivainis, L Ding, J LaCava, ... BioRxiv, 2020.06. 26.174052, 2020 | 4 | 2020 |
| Deep learning integrates histopathology and proteogenomics at a pan-cancer level JM Wang, R Hong, EG Demicco, J Tan, R Lazcano, AL Moreira, Y Li, ... Cell Reports Medicine 4 (9), 2023 | 3 | 2023 |
| Affinity-based interactome analysis of endogenous LINE-1 macromolecules LH Di Stefano, LJ Saba, M Oghbaie, H Jiang, W McKerrow, ... Transposable Elements: Methods and Protocols, 215-256, 2022 | 3 | 2022 |
| Transposon insertion profiling by sequencing (TIPseq) identifies novel LINE-1 insertions in human sperm TS Berteli, F Wang, W McKerrow, PA Navarro, D Fenyo, JD Boeke, ... Journal of Assisted Reproduction and Genetics 40 (8), 1835-1843, 2023 | 2 | 2023 |
