Deepzip: Lossless data compression using recurrent neural networks M Goyal, K Tatwawadi, S Chandak, I Ochoa arXiv preprint arXiv:1811.08162, 2018 | 88 | 2018 |
SPRING: a next-generation compressor for FASTQ data S Chandak, K Tatwawadi, I Ochoa, M Hernaez, T Weissman Bioinformatics 35 (15), 2674-2676, 2019 | 84 | 2019 |
Effect of lossy compression of quality scores on variant calling I Ochoa, M Hernaez, R Goldfeder, T Weissman, E Ashley Briefings in bioinformatics 18 (2), 183-194, 2017 | 84 | 2017 |
QVZ: lossy compression of quality values G Malysa, M Hernaez, I Ochoa, M Rao, K Ganesan, T Weissman Bioinformatics 31 (19), 3122-3129, 2015 | 82 | 2015 |
QualComp: a new lossy compressor for quality scores based on rate distortion theory I Ochoa, H Asnani, D Bharadia, M Chowdhury, T Weissman, G Yona BMC bioinformatics 14, 1-16, 2013 | 68 | 2013 |
FaStore: a space-saving solution for raw sequencing data Ł Roguski, I Ochoa, M Hernaez, S Deorowicz Bioinformatics 34 (16), 2748-2756, 2018 | 55 | 2018 |
Genomic data compression M Hernaez, D Pavlichin, T Weissman, I Ochoa Annual Review of Biomedical Data Science 2, 19-37, 2019 | 51 | 2019 |
iDoComp: a compression scheme for assembled genomes I Ochoa, M Hernaez, T Weissman Bioinformatics 31 (5), 626-633, 2014 | 51 | 2014 |
DZip: Improved general-purpose loss less compression based on novel neural network modeling M Goyal, K Tatwawadi, S Chandak, I Ochoa 2021 Data Compression Conference (DCC), 153-162, 2021 | 43 | 2021 |
Reference based genome compression BG Chern, I Ochoa, A Manolakos, A No, K Venkat, T Weissman 2012 IEEE Information Theory Workshop, 427-431, 2012 | 41 | 2012 |
CaMoDi: a new method for cancer module discovery A Manolakos, I Ochoa, K Venkat, AJ Goldsmith, O Gevaert BMC genomics 15, 1-10, 2014 | 23 | 2014 |
An introduction to MPEG-G, the new ISO standard for genomic information representation C Alberti, T Paridaens, J Voges, D Naro, JJ Ahmad, M Ravasi, D Renzi, ... bioRxiv, 426353, 2018 | 20 | 2018 |
Aligned genomic data compression via improved modeling I Ochoa, M Hernaez, T Weissman Journal of bioinformatics and computational biology 12 (06), 1442002, 2014 | 20 | 2014 |
GTRAC: fast retrieval from compressed collections of genomic variants K Tatwawadi, M Hernaez, I Ochoa, T Weissman Bioinformatics 32 (17), i479-i486, 2016 | 19 | 2016 |
A cluster-based approach to compression of quality scores M Hernaez, I Ochoa, T Weissman 2016 Data Compression Conference (DCC), 261-270, 2016 | 16 | 2016 |
Denoising of aligned genomic data I Fischer-Hwang, I Ochoa, T Weissman, M Hernaez Scientific reports 9 (1), 15067, 2019 | 15 | 2019 |
ENANO: Encoder for NANOpore FASTQ files G Dufort y Álvarez, G Seroussi, P Smircich, J Sotelo, I Ochoa, Á Martín Bioinformatics 36 (16), 4506-4507, 2020 | 14 | 2020 |
RENANO: a REference-based compressor for NANOpore FASTQ files G Dufort y Álvarez, G Seroussi, P Smircich, J Sotelo-Silveira, I Ochoa, ... Bioinformatics 37 (24), 4862-4864, 2021 | 12 | 2021 |
GeneComp, a new reference-based compressor for SAM files R Long, M Hernaez, I Ochoa, T Weissman 2017 Data Compression Conference (DCC), 330-339, 2017 | 10 | 2017 |
LDPC codes for non-uniform memoryless sources and unequal energy allocation I Ochoa, PM Crespo, M Hernaez IEEE communications letters 14 (9), 794-796, 2010 | 10 | 2010 |