Semantic similarity in biomedical ontologies C Pesquita, D Faria, AO Falcão, P Lord, FM Couto PLoS computational biology 5 (7), e1000443, 2009 | 941 | 2009 |
Dynamic modularity in protein interaction networks predicts breast cancer outcome IW Taylor, R Linding, D Warde-Farley, Y Liu, C Pesquita, D Faria, S Bull, ... Nature biotechnology 27 (2), 199-204, 2009 | 858 | 2009 |
Metrics for GO based protein semantic similarity: a systematic evaluation C Pesquita, D Faria, H Bastos, A Ferreira, A Falcao, F Couto BMC bioinformatics 9 (Suppl 5), S4, 2008 | 427 | 2008 |
The agreementmakerlight ontology matching system D Faria, C Pesquita, E Santos, M Palmonari, IF Cruz, FM Couto On the Move to Meaningful Internet Systems: OTM 2013 Conferences …, 2013 | 376 | 2013 |
Evaluating gobased semantic similarity measures C Pesquita, D Faria, H Bastos, A Falcão, F Couto Proc. 10th Annual Bio-Ontologies Meeting 2007, 37-40, 2007 | 152 | 2007 |
User validation in ontology alignment Z Dragisic, V Ivanova, P Lambrix, D Faria, E Jiménez-Ruiz, C Pesquita The Semantic Web–ISWC 2016: 15th International Semantic Web Conference, Kobe …, 2016 | 116 | 2016 |
Ontology alignment repair through modularization and confidence-based heuristics E Santos, D Faria, C Pesquita, FM Couto PloS one 10 (12), e0144807, 2015 | 93 | 2015 |
The Process Model Matching Contest 2015 G Antunes, M Bakhshandeh, JL Borbinha, J Cardoso, S Dadashnia, ... EMISA, 2015 | 87 | 2015 |
Results of the ontology alignment evaluation initiative 2015 M Cheatham, Z Dragisic, J Euzenat, D Faria, A Ferrara, G Flouris, ... 10th ISWC workshop on ontology matching (OM), 60-115, 2015 | 82 | 2015 |
To repair or not to repair: reconciling correctness and coherence in ontology reference alignments C Pesquita, D Faria, E Santos, FM Couto Proc. 8th ISWC ontology matching workshop (OM), Sydney (AU), page this volume 3, 2013 | 81 | 2013 |
Results of the ontology alignment evaluation initiative 2016 M Achichi, M Cheatham, Z Dragisic, J Euzenat, D Faria, A Ferrara, ... OM: Ontology matching, 73-129, 2016 | 80 | 2016 |
Castanea root transcriptome in response to Phytophthora cinnamomi challenge S Serrazina, C Santos, H Machado, C Pesquita, R Vicentini, MS Pais, ... Tree Genetics & Genomes 11 (1), 1-19, 2015 | 79 | 2015 |
CESSM: collaborative evaluation of semantic similarity measures C Pesquita, D Pessoa, D Faria, F Couto JB2009: Challenges in Bioinformatics, 2009 | 76 | 2009 |
AgreementMakerLight Results for OAEI 2014 D Faria, C Martins, A Nanavaty, A Taheri, C Pesquita, E Santos, IF Cruz, ... Ontology Matching workshop, 2014 | 73 | 2014 |
Agreement maker light results for OAEI 2013 D Faria, C Pesquita, E Santos, IF Cruz, FM Couto Proceedings of the 8th International Conference on Ontology Matching-Volume …, 2013 | 73 | 2013 |
Using AgreementMaker to align ontologies for OAEI 2011 IF Cruz, C Stroe, F Caimi, A Fabiani, C Pesquita, FM Couto, M Palmonari ISWC international workshop on ontology matching (OM) 814, 114-121, 2011 | 71 | 2011 |
Results of the ontology alignment evaluation initiative 2020 MAN Pour, A Algergawy, R Amini, D Faria, I Fundulaki, I Harrow, ... 15th International Workshop on Ontology Matching (OM 2020) 2788, 92-138, 2020 | 61 | 2020 |
Results of the Ontology Alignment Evaluation Initiative 2018 A Algergawy, M Cheatham, D Faria, A Ferrara, I Fundulaki, I Harrow, ... 13th International Workshop on Ontology Matching, 76-116, 2018 | 61 | 2018 |
Semantic similarity in the gene ontology C Pesquita The gene ontology handbook, 161-173, 2017 | 61 | 2017 |
Tackling the challenges of matching biomedical ontologies D Faria, C Pesquita, I Mott, C Martins, FM Couto, IF Cruz Journal of biomedical semantics 9, 1-19, 2018 | 60 | 2018 |