| Cy3-DNA stacking interactions strongly depend on the identity of the terminal basepair J Spiriti, JK Binder, M Levitus, A Van Der Vaart Biophysical journal 100 (4), 1049-1057, 2011 | 94 | 2011 |
| DNA bending through large angles is aided by ionic screening J Spiriti, H Kamberaj, AMR De Graff, MF Thorpe, A Van Der Vaart Journal of Chemical Theory and Computation 8 (6), 2145-2156, 2012 | 43 | 2012 |
| Development and application of enhanced sampling techniques to simulate the long‐time scale dynamics of biomolecular systems J Spiriti, H Kamberaj, A Van Der Vaart International journal of quantum chemistry 112 (1), 33-43, 2012 | 35 | 2012 |
| Modulation of protein stability by O-glycosylation in a designed Gc-MAF analog J Spiriti, F Bogani, A van der Vaart, G Ghirlanda Biophysical chemistry 134 (3), 157-167, 2008 | 26 | 2008 |
| DNA bending through roll angles is independent of adjacent base pairs J Spiriti, A van der Vaart The Journal of Physical Chemistry Letters 3 (20), 3029-3033, 2012 | 21 | 2012 |
| Qualitative prediction of ligand dissociation kinetics from focal adhesion kinase using steered molecular dynamics J Spiriti, CF Wong Life 11 (2), 74, 2021 | 17 | 2021 |
| Mechanism of the Calcium-Induced trans−cis Isomerization of a Non-Prolyl Peptide Bond in Clostridium histolyticum Collagenase J Spiriti, A van der Vaart Biochemistry 49 (25), 5314-5320, 2010 | 17 | 2010 |
| DNA binding and bending by Sac7d is stepwise. J Spiriti, A van der Vaart Chembiochem: a European Journal of Chemical Biology 14 (12), 1434-1437, 2013 | 15 | 2013 |
| Simulation of ligand dissociation kinetics from the protein kinase PYK2 J Spiriti, F Noé, CF Wong Journal of computational chemistry 43 (28), 1911-1922, 2022 | 11 | 2022 |
| Middle-way flexible docking: Pose prediction using mixed-resolution Monte Carlo in estrogen receptor α J Spiriti, SR Subramanian, R Palli, M Wu, DM Zuckerman PloS one 14 (4), e0215694, 2019 | 8 | 2019 |
| Tabulation as a high-resolution alternative to coarse-graining protein interactions: Initial application to virus capsid subunits J Spiriti, DM Zuckerman The Journal of Chemical Physics 143 (24), 2015 | 8 | 2015 |
| Tunable coarse graining for Monte Carlo simulations of proteins via smoothed energy tables: Direct and exchange simulations J Spiriti, DM Zuckerman Journal of chemical theory and computation 10 (11), 5161-5177, 2014 | 8 | 2014 |
| Structural integrity of the ribonuclease H domain in HIV‐1 reverse transcriptase RL Slack, J Spiriti, J Ahn, MA Parniak, DM Zuckerman, R Ishima Proteins: Structure, Function, and Bioinformatics 83 (8), 1526-1538, 2015 | 7 | 2015 |
| Entire-Dataset Analysis of NMR Fast-Exchange Titration Spectra: A Mg2+ Titration Analysis for HIV-1 Ribonuclease H Domain I Karki, MT Christen, J Spiriti, RL Slack, M Oda, K Kanaori, DM Zuckerman, ... The Journal of Physical Chemistry B 120 (49), 12420-12431, 2016 | 6 | 2016 |
| Should virus capsids assemble perfectly? Theory and observation of defects J Spiriti, JF Conway, DM Zuckerman Biophysical Journal 119 (9), 1781-1790, 2020 | 5 | 2020 |
| Tabulation as a high-resolution alternative to coarse-graining protein interactions: Initial application to virus capsid subunits JM Spiriti, DM Zuckerman Biophysical Journal 110 (3), 495a, 2016 | 1 | 2016 |
| A New Strategy for Coarse-Grained Protein Simulations: Smoothed Energy Tables JM Spiriti, DM Zuckerman Biophysical Journal 106 (2), 412a, 2014 | 1 | 2014 |
| Quantitative Prediction of Dissociation Rates of PYK2 Ligands Using Umbrella Sampling and Milestoning J Spiriti, CF Wong Journal of Chemical Theory and Computation 20 (9), 4029-4044, 2024 | | 2024 |
| Should Virus Capsids Assemble Perfectly? A Simple Equilibrium Model for Defects JM Spiriti, JF Conway, DM Zuckerman Biophysical Journal 116 (3), 62a, 2019 | | 2019 |
| 'Middle-way'flexible docking: Combining mixed-resolution and non-equilibrium candidate Monte Carlo for improved pose prediction in estrogen receptor alpha J Spiriti, D Zuckerman ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 255, 2018 | | 2018 |
Arjan van der VaartUniversity of South Florida在 usf.edu 的电子邮件经过验证
