Amyloid-β peptide dimers undergo a random coil to β-sheet transition in the aqueous phase but not at the neuronal membrane H Fatafta, M Khaled, MC Owen, A Sayyed-Ahmad, B Strodel Proceedings of the National Academy of Sciences 118 (39), e2106210118, 2021 | 75 | 2021 |
Thermodynamics and kinetics of the amyloid-β peptide revealed by Markov state models based on MD data in agreement with experiment A Paul, S Samantray, M Anteghini, M Khaled, B Strodel Chemical science 12 (19), 6652-6669, 2021 | 56 | 2021 |
Conformational and dynamical effects of Tyr32 phosphorylation in K-Ras: molecular dynamics simulation and Markov state models analysis M Khaled, A Gorfe, A Sayyed-Ahmad The Journal of Physical Chemistry B 123 (36), 7667-7675, 2019 | 40 | 2019 |
A hairpin motif in the amyloid-β peptide is important for formation of disease-related oligomers M Khaled, I Rönnbäck, LL Ilag, A Gräslund, B Strodel, N Österlund Journal of the American Chemical Society 145 (33), 18340-18354, 2023 | 25 | 2023 |
ATRANET–Automated generation of transition networks for the structural characterization of intrinsically disordered proteins M Schäffler, M Khaled, B Strodel Methods 206, 18-26, 2022 | 5 | 2022 |
Comparative molecular dynamics simulations of pathogenic and non-pathogenic huntingtin protein monomers and dimers M Khaled, B Strodel, A Sayyed-Ahmad Frontiers in molecular biosciences 10, 1143353, 2023 | 4 | 2023 |
A brief history of amyloid aggregation simulations H Fatafta, M Khaled, B Kav, OO Olubiyi, B Strodel Wiley Interdisciplinary Reviews: Computational Molecular Science 14 (1), e1703, 2024 | 1 | 2024 |
Amyloid Morphology is Encoded in H-bonds and Electrostatics Interactions Ruling Protein Phase Separation SJ Lenton, H Chaaban, M Khaled, M van de Weert, B Strodel, V Fodera bioRxiv, 2024.01. 10.574993, 2024 | | 2024 |
Capturing Transient Oligomers in Peptide Aggregation N Osterlund, M Khaled, I Ronnback, LL Ilag, A Graslund, B Strodel PROTEIN SCIENCE 32 (12), 2023 | | 2023 |
Network Models and Structural Characteristics of Oligomer Formation of Amyloid-β Peptides and Huntingtin Proteins Based on Microsecond Timescale Molecular Dynamics Simulations MAM Khaled Universitäts-und Landesbibliothek der Heinrich-Heine-Universität Düsseldorf, 2023 | | 2023 |
INVESTIGATING CONFORMATIONAL AND DYNAMIC DIFFERENCES AMONG RAS ONCOGENIC MUTANTS THROUGH MD SIMULATIONS AND MARKOV MODELS M Khaled Birzeit University, Palestine, 2019 | | 2019 |