| Initial sequencing and comparative analysis of the mouse genome European Bioinformatics Institute: Birney Ewan 3 Goldman Nick 3 Kasprzyk ... Nature 420 (6915), 520-562, 2002 | 8600 | 2002 |
| Near-optimal probabilistic RNA-seq quantification NL Bray, H Pimentel, P Melsted, L Pachter Nature biotechnology 34 (5), 525-527, 2016 | 8237 | 2016 |
| Genome sequence of the Brown Norway rat yields insights into mammalian evolution University of Utah Weiss Robert B. 14 Dunn Diane M. 14, ... Nature 428 (6982), 493-521, 2004 | 2538 | 2004 |
| Differential analysis of RNA-seq incorporating quantification uncertainty H Pimentel, NL Bray, S Puente, P Melsted, L Pachter Nature methods 14 (7), 687-690, 2017 | 1448 | 2017 |
| A high-resolution atlas of nucleosome occupancy in yeast W Lee, D Tillo, N Bray, RH Morse, RW Davis, TR Hughes, C Nislow Nature genetics 39 (10), 1235-1244, 2007 | 1059 | 2007 |
| Nanoparticle delivery of Cas9 ribonucleoprotein and donor DNA in vivo induces homology-directed DNA repair K Lee, M Conboy, HM Park, F Jiang, HJ Kim, MA Dewitt, VA Mackley, ... Nature biomedical engineering 1 (11), 889-901, 2017 | 721 | 2017 |
| AVID: A global alignment program N Bray, I Dubchak, L Pachter Genome research 13 (1), 97-102, 2003 | 666 | 2003 |
| A genome-wide map of conserved microRNA targets in C. elegans S Lall, D Grün, A Krek, K Chen, YL Wang, CN Dewey, P Sood, T Colombo, ... Current biology 16 (5), 460-471, 2006 | 565 | 2006 |
| Selection-free genome editing of the sickle mutation in human adult hematopoietic stem/progenitor cells MA DeWitt, W Magis, NL Bray, T Wang, JR Berman, F Urbinati, SJ Heo, ... Science translational medicine 8 (360), 360ra134-360ra134, 2016 | 514 | 2016 |
| MAVID: constrained ancestral alignment of multiple sequences N Bray, L Pachter Genome research 14 (4), 693-699, 2004 | 369 | 2004 |
| Disabling Cas9 by an anti-CRISPR DNA mimic J Shin, F Jiang, JJ Liu, NL Bray, BJ Rauch, SH Baik, E Nogales, ... Science advances 3 (7), e1701620, 2017 | 359 | 2017 |
| Discovery of stimulation-responsive immune enhancers with CRISPR activation DR Simeonov, BG Gowen, M Boontanrart, TL Roth, JD Gagnon, ... Nature 549 (7670), 111-115, 2017 | 291 | 2017 |
| Strategies and tools for whole-genome alignments O Couronne, A Poliakov, N Bray, T Ishkhanov, D Ryaboy, E Rubin, ... Genome research 13 (1), 73-80, 2003 | 268 | 2003 |
| CRISPR–Cas9 genome editing in human cells occurs via the Fanconi anemia pathway CD Richardson, KR Kazane, SJ Feng, E Zelin, NL Bray, AJ Schäfer, ... Nature genetics 50 (8), 1132-1139, 2018 | 235 | 2018 |
| Gene-level differential analysis at transcript-level resolution L Yi, H Pimentel, NL Bray, L Pachter Genome biology 19, 1-11, 2018 | 146 | 2018 |
| Pseudoalignment for metagenomic read assignment L Schaeffer, H Pimentel, N Bray, P Melsted, L Pachter Bioinformatics 33 (14), 2082-2088, 2017 | 107 | 2017 |
| MAVID multiple alignment server N Bray, L Pachter Nucleic acids research 31 (13), 3525-3526, 2003 | 97 | 2003 |
| Non-homologous DNA increases gene disruption efficiency by altering DNA repair outcomes CD Richardson, GJ Ray, NL Bray, JE Corn Nature communications 7 (1), 12463, 2016 | 92 | 2016 |
| Controlled cycling and quiescence enables efficient HDR in engraftment-enriched adult hematopoietic stem and progenitor cells JJ Shin, MS Schröder, F Caiado, SK Wyman, NL Bray, M Bordi, MA Dewitt, ... Cell reports 32 (9), 2020 | 64 | 2020 |
| Expression reflects population structure BC Brown, NL Bray, L Pachter PLoS genetics 14 (12), e1007841, 2018 | 31 | 2018 |
