Algorithms and tools for protein–protein interaction networks clustering, with a special focus on population-based stochastic methods C Pizzuti, SE Rombo Bioinformatics 30 (10), 1343-1352, 2014 | 134 | 2014 |
Compressive biological sequence analysis and archival in the era of high-throughput sequencing technologies R Giancarlo, SE Rombo, F Utro Briefings in bioinformatics 15 (3), 390-406, 2014 | 66 | 2014 |
Discovering representative models in large time series databases S Rombo, G Terracina Flexible Query Answering Systems: 6th International Conference, FQAS 2004 …, 2004 | 41 | 2004 |
A coclustering approach for mining large protein-protein interaction networks C Pizzuti, SE Rombo IEEE/ACM Transactions on Computational Biology and Bioinformatics 9 (3), 717-730, 2011 | 34 | 2011 |
Epigenomic k-mer dictionaries: shedding light on how sequence composition influences in vivo nucleosome positioning R Giancarlo, SE Rombo, F Utro Bioinformatics 31 (18), 2939-2946, 2015 | 30 | 2015 |
Searching for repetitions in biological networks: methods, resources and tools S Panni, SE Rombo Briefings in bioinformatics 16 (1), 118-136, 2015 | 30 | 2015 |
Analyzing big datasets of genomic sequences: fast and scalable collection of k-mer statistics U Ferraro Petrillo, M Sorella, G Cattaneo, R Giancarlo, SE Rombo BMC bioinformatics 20, 1-14, 2019 | 29 | 2019 |
Complex detection in protein-protein interaction networks: a compact overview for researchers and practitioners C Pizzuti, SE Rombo, E Marchiori European Conference on Evolutionary Computation, Machine Learning and Data …, 2012 | 28 | 2012 |
Improving protein secondary structure predictions by prediction fusion L Palopoli, SE Rombo, G Terracina, G Tradigo, P Veltri Information Fusion 10 (3), 217-232, 2009 | 26 | 2009 |
A technique to search for functional similarities in protein-protein interaction networks V Fionda, L Palopoli, S Panni, SE Rombo International journal of data mining and bioinformatics 3 (4), 431-453, 2009 | 26 | 2009 |
A technique to search for functional similarities in protein-protein interaction networks V Fionda, L Palopoli, S Panni, SE Rombo International journal of data mining and bioinformatics 3 (4), 431-453, 2009 | 26 | 2009 |
Motif patterns in 2D A Apostolico, L Parida, SE Rombo Theoretical Computer Science 390 (1), 40-55, 2008 | 26 | 2008 |
Asymmetric comparison and querying of biological networks N Ferraro, L Palopoli, S Panni, SE Rombo IEEE/ACM Transactions on Computational Biology and Bioinformatics 8 (4), 876-889, 2011 | 25 | 2011 |
PINCoC: A Co-clustering Based Approach to Analyze Protein-Protein Interaction Networks C Pizzuti, SE Rombo Intelligent Data Engineering and Automated Learning-IDEAL 2007: 8th …, 2007 | 25 | 2007 |
Experimental evaluation of topological-based fitness functions to detect complexes in PPI networks C Pizzuti, S Rombo Proceedings of the 14th annual conference on Genetic and evolutionary …, 2012 | 22 | 2012 |
Protein-protein interaction network querying by a “focus and zoom” approach V Fionda, L Palopoli, S Panni, SE Rombo International Conference on Bioinformatics Research and Development, 331-346, 2008 | 22 | 2008 |
Irredundant tandem motifs L Parida, C Pizzi, SE Rombo Theoretical Computer Science 525, 89-102, 2014 | 18 | 2014 |
An evolutionary restricted neighborhood search clustering approach for PPI networks C Pizzuti, SE Rombo Neurocomputing 145, 53-61, 2014 | 16 | 2014 |
Multi-functional protein clustering in ppi networks C Pizzuti, SE Rombo International Conference on Bioinformatics Research and Development, 318-330, 2008 | 16 | 2008 |
Extracting string motif bases for quorum higher than two SE Rombo Theoretical Computer Science 460, 94-103, 2012 | 14 | 2012 |