| Transcriptional landscape of human tissue lymphocytes unveils uniqueness of tumor-infiltrating T regulatory cells M De Simone, A Arrigoni, G Rossetti, P Gruarin, V Ranzani, C Politano, ... Immunity 45 (5), 1135-1147, 2016 | 621 | 2016 |
| The long intergenic noncoding RNA landscape of human lymphocytes highlights the regulation of T cell differentiation by linc-MAF-4 V Ranzani, G Rossetti, I Panzeri, A Arrigoni, RJP Bonnal, S Curti, ... Nature immunology 16 (3), 318, 2015 | 359 | 2015 |
| Whole-genome pyrosequencing of an epidemic multidrug-resistant Acinetobacter baumannii strain belonging to the European clone II group M Iacono, L Villa, D Fortini, R Bordoni, F Imperi, RJP Bonnal, ... Antimicrobial agents and chemotherapy 52 (7), 2616-2625, 2008 | 352 | 2008 |
| Distinct microRNA signatures in human lymphocyte subsets and enforcement of the naive state in CD4+ T cells by the microRNA miR-125b RL Rossi, G Rossetti, L Wenandy, S Curti, A Ripamonti, RJP Bonnal, ... Nature immunology 12 (8), 796, 2011 | 326 | 2011 |
| A transcriptional sketch of a primary human breast cancer by 454 deep sequencing A Guffanti, M Iacono, P Pelucchi, N Kim, G Soldà, LJ Croft, RJ Taft, E Rizzi, ... BMC genomics 10 (1), 163, 2009 | 288 | 2009 |
| A transcriptional sketch of a primary human breast cancer by 454 deep sequencing. BMC Highly accessed paper A Guffanti, M Iacono, P Pelucchi, N Kim, G Solda, L Croft, R Taft, E Rizzi, ... | 288 | 2009 |
| BioRuby: bioinformatics software for the Ruby programming language N Goto, P Prins, M Nakao, R Bonnal, J Aerts, T Katayama Bioinformatics 26 (20), 2617-2619, 2010 | 219 | 2010 |
| Complete mitochondrial genome sequence of the Tyrolean Iceman L Ermini, C Olivieri, E Rizzi, G Corti, R Bonnal, P Soares, S Luciani, ... Current Biology 18 (21), 1687-1693, 2008 | 181 | 2008 |
| Role of microRNAs and long‐non‐coding RNAs in CD4+ T‐cell differentiation M Pagani, G Rossetti, I Panzeri, P de Candia, RJP Bonnal, RL Rossi, ... Immunological reviews 253 (1), 82-96, 2013 | 118 | 2013 |
| Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments RH Ramirez-Gonzalez, R Bonnal, M Caccamo, D MacLean Source code for biology and medicine 7 (1), 6, 2012 | 91 | 2012 |
| RSSsite: a reference database and prediction tool for the identification of cryptic Recombination Signal Sequences in human and murine genomes I Merelli, A Guffanti, M Fabbri, A Cocito, L Furia, U Grazini, RJ Bonnal, ... Nucleic acids research 38 (suppl_2), W262-W267, 2010 | 82 | 2010 |
| BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains T Katayama, MD Wilkinson, KF Aoki-Kinoshita, S Kawashima, ... Journal of biomedical semantics 5 (1), 5, 2014 | 69 | 2014 |
| Identification of new autoantigens by protein array indicates a role for IL4 neutralization in autoimmune hepatitis C Zingaretti, M Arigò, A Cardaci, M Moro, M Crosti, A Sinisi, E Sugliano, ... Molecular & Cellular Proteomics 11 (12), 1885-1897, 2012 | 58 | 2012 |
| The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows T Katayama, K Arakawa, M Nakao, K Ono, KF Aoki-Kinoshita, ... Journal of biomedical semantics 1 (1), 8, 2010 | 54 | 2010 |
| Strategies for comparing gene expression profiles from different microarray platforms: Application to a case–control experiment M Severgnini, S Bicciato, E Mangano, F Scarlatti, A Mezzelani, M Mattioli, ... Analytical biochemistry 353 (1), 43-56, 2006 | 54 | 2006 |
| Community-driven development for computational biology at Sprints, Hackathons and Codefests S Möller, E Afgan, M Banck, RJP Bonnal, T Booth, J Chilton, PJA Cock, ... BMC bioinformatics 15 (S14), S7, 2014 | 53 | 2014 |
| Complete genome sequence of a serotype 11A, ST62 Streptococcus pneumoniaeinvasive isolate R Camilli, RJP Bonnal, M Del Grosso, M Iacono, G Corti, E Rizzi, ... BMC microbiology 11 (1), 25, 2011 | 43 | 2011 |
| De novo transcriptome profiling of highly purified human lymphocytes primary cells RJP Bonnal, V Ranzani, A Arrigoni, S Curti, I Panzeri, P Gruarin, ... Scientific data 2, 150051, 2015 | 42 | 2015 |
| Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics RJP Bonnal, J Aerts, G Githinji, N Goto, D MacLean, CA Miller, H Mishima, ... Bioinformatics 28 (7), 1035-1037, 2012 | 42 | 2012 |
| Analysis RNA-seq and Noncoding RNA A Arrigoni, V Ranzani, G Rossetti, I Panzeri, S Abrignani, RJP Bonnal, ... Polycomb Group Proteins, 125-135, 2016 | 36 | 2016 |
