Significance estimation for large scale metabolomics annotations by spectral matching K Scheubert, F Hufsky, D Petras, M Wang, LF Nothias, K Dührkop, ... Nature Communications 8 (1), 1494, 2017 | 180 | 2017 |
Computational mass spectrometry for small molecules K Scheubert, F Hufsky, S Böcker Journal of cheminformatics 5, 1-24, 2013 | 163 | 2013 |
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research F Hufsky, K Lamkiewicz, A Almeida, A Aouacheria, C Arighi, A Bateman, ... Briefings in bioinformatics 22 (2), 642-663, 2021 | 144 | 2021 |
Identifying the unknowns by aligning fragmentation trees F Rasche, K Scheubert, F Hufsky, T Zichner, M Kai, A Svatos, S Böcker Analytical Chemistry 84 (7), 3417-3426, 0 | 134* | |
Computational mass spectrometry for small-molecule fragmentation F Hufsky, K Scheubert, S Böcker TrAC Trends in Analytical Chemistry 53, 41-48, 2014 | 129 | 2014 |
Mining molecular structure databases: Identification of small molecules based on fragmentation mass spectrometry data F Hufsky, S Böcker Mass spectrometry reviews 36 (5), 624-633, 2017 | 119 | 2017 |
New kids on the block: novel informatics methods for natural product discovery F Hufsky, K Scheubert, S Böcker Natural product reports 31 (6), 807-817, 2014 | 92 | 2014 |
A new era of virus bioinformatics B Ibrahim, DP McMahon, F Hufsky, M Beer, L Deng, P Le Mercier, ... Virus research 251, 86-90, 2018 | 76 | 2018 |
Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells M Hölzer, V Krähling, F Amman, E Barth, SH Bernhart, VAO Carmelo, ... Scientific reports 6 (1), 34589, 2016 | 64 | 2016 |
< i> De Novo</i> Analysis of Electron Impact Mass Spectra Using Fragmentation Trees F Hufsky, M Rempt, F Rasche, G Pohnert, S Böcker Analytica Chimica Acta 739, 67-76, 2012 | 39 | 2012 |
Computing fragmentation trees from metabolite multiple mass spectrometry data K Scheubert, F Hufsky, F Rasche, S Böcker Journal of computational biology 18 (11), 1383-1397, 2011 | 39 | 2011 |
Massive effect on LncRNAs in human monocytes during fungal and bacterial infections and in response to vitamins A and D K Riege, M Hölzer, TE Klassert, E Barth, J Bräuer, M Collatz, F Hufsky, ... Scientific reports 7 (1), 40598, 2017 | 37 | 2017 |
Molecular formula identification using isotope pattern analysis and calculation of fragmentation trees K Dührkop, F Hufsky, S Böcker Mass Spectrometry 3 (Special_Issue_2), S0037-S0037, 2014 | 33 | 2014 |
Predicting the presence of uncommon elements in unknown biomolecules from isotope patterns M Meusel, F Hufsky, F Panter, D Krug, R Müller, S Böcker Analytical chemistry 88 (15), 7556-7566, 2016 | 32 | 2016 |
Swiftly computing center strings F Hufsky, L Kuchenbecker, K Jahn, J Stoye, S Böcker BMC Bioinformatics 12 (1), 106, 2011 | 24 | 2011 |
Determination of 15N-Incorporation into Plant Proteins and their Absolute Quantitation: A New Tool to Study Nitrogen Flux Dynamics and Protein Pool Sizes Elicited … L Ullmann-Zeunert, A Muck, N Wielsch, F Hufsky, MA Stanton, S Bartram, ... Journal of proteome research 11 (10), 4947-4960, 2012 | 23 | 2012 |
Fast alignment of fragmentation trees F Hufsky, K Dührkop, F Rasche, M Chimani, S Böcker Bioinformatics 28 (12), i265-i273, 2012 | 18 | 2012 |
Virologists—Heroes need weapons F Hufsky, B Ibrahim, M Beer, L Deng, PL Mercier, DP McMahon, ... PLoS pathogens 14 (2), e1006771, 2018 | 17 | 2018 |
The role of non-coding RNAs in the human placenta M Žarković, F Hufsky, UR Markert, M Marz Cells 11 (9), 1588, 2022 | 12 | 2022 |
Finding characteristic substructures for metabolite classes M Ludwig, F Hufsky, S Elshamy, S Böcker German Conference on Bioinformatics, 23-38, 2012 | 10 | 2012 |