| Topological domains in mammalian genomes identified by analysis of chromatin interactions JR Dixon, S Selvaraj, F Yue, A Kim, Y Li, Y Shen, M Hu, JS Liu, B Ren Nature 485 (7398), 376-380, 2012 | 6912 | 2012 |
| Integrative analysis of 111 reference human epigenomes A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ... Nature 518 (7539), 317-330, 2015 | 6060 | 2015 |
| Chromatin architecture reorganization during stem cell differentiation JR Dixon, I Jung, S Selvaraj, Y Shen, JE Antosiewicz-Bourget, AY Lee, ... Nature 518 (7539), 331-336, 2015 | 1701 | 2015 |
| A map of the cis-regulatory sequences in the mouse genome Y Shen, F Yue, DF McCleary, Z Ye, L Edsall, S Kuan, U Wagner, J Dixon, ... Nature 488 (7409), 116-120, 2012 | 1543 | 2012 |
| A high-resolution map of the three-dimensional chromatin interactome in human cells F Jin, Y Li, JR Dixon, S Selvaraj, Z Ye, AY Lee, CA Yen, AD Schmitt, ... Nature 503 (7475), 290-294, 2013 | 1387 | 2013 |
| Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells J Zuin, JR Dixon, MIJA Van Der Reijden, Z Ye, P Kolovos, RWW Brouwer, ... Proceedings of the National Academy of Sciences 111 (3), 996-1001, 2014 | 895 | 2014 |
| Chromatin domains: the unit of chromosome organization JR Dixon, DU Gorkin, B Ren Molecular cell 62 (5), 668-680, 2016 | 815 | 2016 |
| Allelic reprogramming of 3D chromatin architecture during early mammalian development Z Du, H Zheng, B Huang, R Ma, J Wu, X Zhang, J He, Y Xiang, Q Wang, ... Nature 547 (7662), 232-235, 2017 | 448 | 2017 |
| Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing S Selvaraj, J R Dixon, V Bansal, B Ren Nature biotechnology 31 (12), 1111-1118, 2013 | 341 | 2013 |
| Integrative detection and analysis of structural variation in cancer genomes JR Dixon, J Xu, V Dileep, Y Zhan, F Song, VT Le, GG Yardımcı, ... Nature genetics 50 (10), 1388-1398, 2018 | 323 | 2018 |
| Bcl-6 and NF-κB cistromes mediate opposing regulation of the innate immune response GD Barish, TY Ruth, M Karunasiri, CB Ocampo, J Dixon, C Benner, ... Genes & development 24 (24), 2760-2765, 2010 | 287 | 2010 |
| Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation N Kubo, H Ishii, X Xiong, S Bianco, F Meitinger, R Hu, JD Hocker, ... Nature structural & molecular biology 28 (2), 152-161, 2021 | 262* | 2021 |
| Bayesian inference of spatial organizations of chromosomes M Hu, K Deng, Z Qin, J Dixon, S Selvaraj, J Fang, B Ren, JS Liu PLoS computational biology 9 (1), e1002893, 2013 | 247 | 2013 |
| Simultaneous profiling of 3D genome structure and DNA methylation in single human cells DS Lee, C Luo, J Zhou, S Chandran, A Rivkin, A Bartlett, JR Nery, ... Nature methods 16 (10), 999-1006, 2019 | 232 | 2019 |
| Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer KC Akdemir, VT Le, S Chandran, Y Li, RG Verhaak, R Beroukhim, ... Nature genetics 52 (3), 294-305, 2020 | 207 | 2020 |
| CRISPR reveals a distal super-enhancer required for Sox2 expression in mouse embryonic stem cells Y Li, CM Rivera, H Ishii, F Jin, S Selvaraj, AY Lee, JR Dixon, B Ren PloS one 9 (12), e114485, 2014 | 200 | 2014 |
| A non-canonical BRD9-containing BAF chromatin remodeling complex regulates naive pluripotency in mouse embryonic stem cells J Gatchalian, S Malik, J Ho, DS Lee, TWR Kelso, MN Shokhirev, JR Dixon, ... Nature communications 9 (1), 5139, 2018 | 180 | 2018 |
| DNA methylation atlas of the mouse brain at single-cell resolution H Liu, J Zhou, W Tian, C Luo, A Bartlett, A Aldridge, J Lucero, JK Osteen, ... Nature 598 (7879), 120-128, 2021 | 168 | 2021 |
| Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes M Song, X Yang, X Ren, L Maliskova, B Li, IR Jones, C Wang, F Jacob, ... Nature genetics 51 (8), 1252-1262, 2019 | 167 | 2019 |
| Involvement of a mitochondrial phosphatase in the regulation of ATP production and insulin secretion in pancreatic β cells DJ Pagliarini, SE Wiley, ME Kimple, JR Dixon, P Kelly, CA Worby, ... Molecular cell 19 (2), 197-207, 2005 | 167 | 2005 |
