| DeepCC: a novel deep learning-based framework for cancer molecular subtype classification F Gao, W Wang, M Tan, L Zhu, Y Zhang, E Fessler, L Vermeulen, X Wang Oncogenesis 8 (9), 1-12, 2019 | 192 | 2019 |
| Defining super-enhancer landscape in triple-negative breast cancer by multiomic profiling H Huang, J Hu, A Maryam, Q Huang, Y Zhang, S Ramakrishnan, J Li, ... Nature communications 12 (1), 1-16, 2021 | 84 | 2021 |
| Decomposition of RNA methylome reveals co-methylation patterns induced by latent enzymatic regulators of the epitranscriptome L Liu, SW Zhang, YC Zhang, H Liu, L Zhang, R Chen, Y Huang, J Meng Molecular BioSystems 11 (1), 262-274, 2015 | 31 | 2015 |
| Cancer-associated histone mutation H2BG53D disrupts DNA–histone octamer interaction and promotes oncogenic phenotypes YCE Wan, TCS Leung, D Ding, X Sun, J Liu, L Zhu, TZE Kang, D Yang, ... Signal Transduction and Targeted Therapy 5 (1), 1-4, 2020 | 28 | 2020 |
| Spatially enhanced differential RNA methylation analysis from affinity-based sequencing data with hidden Markov model YC Zhang, SW Zhang, L Liu, H Liu, L Zhang, X Cui, Y Huang, J Meng BioMed research international 2015, 2015 | 16 | 2015 |
| A Network-Based Approach for Identification of Subtype-Specific Master Regulators in Pancreatic Ductal Adenocarcinoma Y Zhang, L Zhu, X Wang Genes 11 (2), 155, 2020 | 14 | 2020 |
| Exploring the interaction patterns in seasonal marine microbial communities with network analysis SW Zhang, ZG Wei, C Zhou, YC Zhang, TH Zhang 2013 7th International Conference on Systems Biology (ISB), 63-68, 2013 | 8 | 2013 |
| HTSanalyzeR2: an ultra fast R/Bioconductor package for high-throughput screens with interactive report F Gao, X Mei, L Zhu, Y Zhang, W Wang, X Wang Celebrating The 25th Conference on Intelligient Systems for Molecular …, 2017 | 3 | 2017 |
| NEM-Tar: a probabilistic graphical model for cancer regulatory network inference and prioritization of potential therapeutic targets from multi-omics data Y Zhang, L Zhu, X Wang Frontiers in Genetics 12, 2021 | 1 | 2021 |
| NrGe-DTL: a computational framework for cancer drug response prediction based on deep transfer learning from combined denoised genomic profiles and chemical structure embedding … Y Zhang, L Lian, X Yang 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2023 | | 2023 |
| Differential analysis of RNA methylome with improved spatial resolution YC Zhang, SW Zhang, L Liu, L Zhang, H Liu, X Cui, Y Huang, J Meng 2014 IEEE Global Conference on Signal and Information Processing (GlobalSIP …, 2014 | | 2014 |
