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Rafael Silva Rocha
Rafael Silva Rocha
Founder and CTO at ByMyCell
在 bymycell.com 的电子邮件经过验证 - 首页
标题
引用次数
引用次数
年份
The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes
R Silva-Rocha, E Martínez-García, B Calles, M Chavarría, ...
Nucleic acids research 41 (D1), D666-D675, 2013
6052013
Comparative metabolism of cellulose, sophorose and glucose in Trichoderma reeseiusing high-throughput genomic and proteomic analyses
L dos Santos Castro, WR Pedersoli, ACC Antoniêto, AS Steindorff, ...
Biotechnology for biofuels 7, 1-18, 2014
1322014
Noise and robustness in prokaryotic regulatory networks
R Silva-Rocha, V de Lorenzo
Annual review of microbiology 64, 257-275, 2010
1242010
Mining logic gates in prokaryotic transcriptional regulation networks
R Silva-Rocha, V de Lorenzo
FEBS letters 582 (8), 1237-1244, 2008
1002008
The post-genomic era of Trichoderma reesei: what's next?
VK Gupta, AS Steindorff, RG de Paula, R Silva-Rocha, AR Mach-Aigner, ...
Trends in Biotechnology 34 (12), 970-982, 2016
992016
Understanding the Role of the Master Regulator XYR1 in Trichoderma reesei by Global Transcriptional Analysis
L dos Santos Castro, RG de Paula, ACC Antonieto, GF Persinoti, ...
Frontiers in microbiology 7, 175, 2016
732016
Synthetic biology approaches to improve biocatalyst identification in metagenomic library screening
ME Guazzaroni, R Silva‐Rocha, RJ Ward
Microbial Biotechnology 8 (1), 52-64, 2015
732015
The private life of environmental bacteria: pollutant biodegradation at the single cell level
PI Nikel, R Silva‐Rocha, I Benedetti, V de Lorenzo
Environmental microbiology 16 (3), 628-642, 2014
722014
Transcriptomic fingerprinting of Pseudomonas putida under alternative physiological regimes
J Kim, JC Oliveros, PI Nikel, V de Lorenzo, R Silva‐Rocha
Environmental microbiology reports 5 (6), 883-891, 2013
672013
Defining the genome-wide role of CRE1 during carbon catabolite repression in Trichoderma reesei using RNA-Seq analysis
ACC Antoniêto, L dos Santos Castro, R Silva-Rocha, GF Persinoti, ...
Fungal genetics and biology 73, 93-103, 2014
662014
Galectin-3 impacts Cryptococcus neoformans infection through direct antifungal effects
F Almeida, JM Wolf, TA Da Silva, CM DeLeon-Rodriguez, CP Rezende, ...
Nature communications 8 (1), 1968, 2017
652017
The art of vector engineering: towards the construction of next‐generation genetic tools
LC Nora, CA Westmann, L Martins‐Santana, LF Alves, LMO Monteiro, ...
Microbial biotechnology 12 (1), 125-147, 2019
582019
The Aspergillus fumigatus CrzA Transcription Factor Activates Chitin Synthase Gene Expression during the Caspofungin Paradoxical Effect
LNA Ries, MC Rocha, PA De Castro, R Silva-Rocha, RN Silva, FZ Freitas, ...
MBio 8 (3), 10.1128/mbio. 00705-17, 2017
572017
Expression pattern of cellulolytic and xylanolytic genes regulated by transcriptional factors XYR1 and CRE1 are affected by carbon source in Trichoderma reesei
L dos Santos Castro, ACC Antoniêto, WR Pedersoli, R Silva-Rocha, ...
Gene Expression Patterns 14 (2), 88-95, 2014
552014
Loving the poison: the methylcitrate cycle and bacterial pathogenesis
SK Dolan, A Wijaya, SM Geddis, DR Spring, R Silva-Rocha, M Welch
Microbiology 164 (3), 251-259, 2018
472018
The impact of chromatin remodelling on cellulase expression in Trichoderma reesei
TM Mello-de-Sousa, A Rassinger, ME Pucher, L dos Santos Castro, ...
BMC genomics 16, 1-11, 2015
452015
The regulatory logic of m‐xylene biodegradation by Pseudomonas putida mt‐2 exposed by dynamic modelling of the principal node Ps/Pr of the TOL plasmid
M Koutinas, MC Lam, A Kiparissides, R Silva‐Rocha, M Godinho, ...
Environmental microbiology 12 (6), 1705-1718, 2010
452010
The logicome of environmental bacteria: merging catabolic and regulatory events with Boolean formalisms
R Silva‐Rocha, J Tamames, VM dos Santos, V de Lorenzo
Environmental Microbiology 13 (9), 2389-2402, 2011
382011
Systems and synthetic biology approaches to engineer fungi for fine chemical production
L Martins-Santana, LC Nora, A Sanches-Medeiros, GL Lovate, ...
Frontiers in Bioengineering and Biotechnology 6, 117, 2018
372018
Trichoderma Reesei CRE1-Mediated Carbon Catabolite Repression in Response to Sophorose Through RNA Sequencing Analysis
A Cristina Campos Antonieto, RG de Paula, L dos Santos Castro, ...
Current Genomics 17 (2), 119-131, 2016
372016
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