The Burmese python genome reveals the molecular basis for extreme adaptation in snakes TA Castoe, APJ de Koning, KT Hall, DC Card, DR Schield, MK Fujita, ... Proceedings of the National Academy of Sciences 110 (51), 20645-20650, 2013 | 325 | 2013 |
Squamate reptiles challenge paradigms of genomic repeat element evolution set by birds and mammals GIM Pasquesi, RH Adams, DC Card, DR Schield, AB Corbin, BW Perry, ... Nature Communications 9 (1), 2774, 2018 | 119 | 2018 |
Growth and stress response mechanisms underlying post-feeding regenerative organ growth in the Burmese python AL Andrew, BW Perry, DC Card, DR Schield, RP Ruggiero, SE McGaugh, ... BMC genomics 18, 1-18, 2017 | 43 | 2017 |
Eye development NE Baker, K Li, M Quiquand, R Ruggiero, LH Wang Methods 68 (1), 252-259, 2014 | 39 | 2014 |
Rapid changes in gene expression direct rapid shifts in intestinal form and function in the Burmese python after feeding AL Andrew, DC Card, RP Ruggiero, DR Schield, RH Adams, DD Pollock, ... Physiological Genomics 47 (5), 147-157, 2015 | 37 | 2015 |
Two low coverage bird genomes and a comparison of reference-guided versus de novo genome assemblies DC Card, DR Schield, J Reyes-Velasco, MK Fujita, AL Andrew, ... PLoS One 9 (9), e106649, 2014 | 34 | 2014 |
Vertebrate lineages exhibit diverse patterns of transposable element regulation and expression across tissues GIM Pasquesi, BW Perry, MW Vandewege, RP Ruggiero, DR Schield, ... Genome Biology and Evolution 12 (5), 506-521, 2020 | 33 | 2020 |
LINE Insertion Polymorphisms are Abundant but at Low Frequencies across Populations of Anolis carolinensis RP Ruggiero, Y Bourgeois, S Boissinot Frontiers in genetics 8, 44, 2017 | 33 | 2017 |
Finding and extending ancient simple sequence repeat-derived regions in the human genome JA Shortt, RP Ruggiero, C Cox, AC Wacholder, DD Pollock Mobile DNA 11, 1-12, 2020 | 24 | 2020 |
Recent Secondary Contacts, Linked Selection, and Variable Recombination Rates Shape Genomic Diversity in the Model Species Anolis carolinensis Y Bourgeois, RP Ruggiero, JD Manthey, S Boissinot Genome Biology and Evolution 11 (7), 2009-2022, 2019 | 23 | 2019 |
Mitosis in Neurons: Roughex and APC/C Maintain Cell Cycle Exit to Prevent Cytokinetic and Axonal Defects in Drosophila Photoreceptor Neurons R Ruggiero, A Kale, B Thomas, NE Baker PLoS genetics 8 (11), e1003049, 2012 | 22 | 2012 |
Inference of transposable element ancestry AC Wacholder, C Cox, TJ Meyer, RP Ruggiero, V Vemulapalli, A Damert, ... PLoS genetics 10 (8), e1004482, 2014 | 21 | 2014 |
Disentangling the determinants of transposable elements dynamics in vertebrate genomes using empirical evidences and simulations Y Bourgeois, RP Ruggiero, I Hariyani, S Boissinot PLoS genetics 16 (10), e1009082, 2020 | 20 | 2020 |
The mobilome of reptiles: Evolution, structure, and function S Boissinot, Y Bourgeois, JD Manthey, RP Ruggiero Cytogenetic and genome research 157 (1-2), 21-33, 2019 | 19 | 2019 |
Differential effect of selection against LINE retrotransposons among vertebrates inferred from whole-genome data and demographic modeling AT Xue, RP Ruggiero, MJ Hickerson, S Boissinot Genome Biology and Evolution 10 (5), 1265-1281, 2018 | 19 | 2018 |
Squamate reptile genomics and evolution KJ Shaney, DC Card, DR Schield, RP Ruggiero, DD Pollock, ... Venom Genomics and Proteomics. Edited by P. Gopalakrishnakone and JJ Calvete …, 2014 | 12 | 2014 |
Variation in base composition underlies functional and evolutionary divergence in non-LTR retrotransposons RP Ruggiero, S Boissinot Mobile DNA 11, 1-18, 2020 | 5 | 2020 |
Recent secondary contacts, background selection and variable recombination rates shape genomic diversity in the model species Anolis carolinensis Y Bourgeois, RP Ruggiero, JD Manthey, S Boissinot bioRxiv, 352922, 2018 | 3 | 2018 |
Erratum: The Burmese python genome reveals the molecular basis for extreme adaptation in snakes (Proceedings of the National Academy of Sciences of the United States of America … TA Castoe, APJ De Koning, KT Hall, DC Card, DR Schield, MK Fujita, ... Proceedings of the National Academy of Sciences of the United States of …, 2014 | 3 | 2014 |
Breeding system and geospatial variation shape the population genetics of Triodanis perfoliata M Tackett, C Berg, T Simmonds, O Lopez, J Brown, R Ruggiero, J Weber Ecology and Evolution 12 (10), e9382, 2022 | 2 | 2022 |