| E7 (7) formulation of N= 2 backgrounds M Grana, J Louis, A Sim, D Waldram Journal of High Energy Physics 2009 (07), 104, 2009 | 91 | 2009 |
| Quantification of HTLV-1 clonality and TCR diversity DJ Laydon, A Melamed, A Sim, NA Gillet, K Sim, S Darko, JS Kroll, ... PLoS computational biology 10 (6), e1003646, 2014 | 83 | 2014 |
| Big data in drug discovery N Brown, J Cambruzzi, PJ Cox, M Davies, J Dunbar, D Plumbley, ... Progress in medicinal chemistry 57, 277-356, 2018 | 75 | 2018 |
| Systems analysis of the dynamic inflammatory response to tissue damage reveals spatiotemporal properties of the wound attractant gradient H Weavers, J Liepe, A Sim, W Wood, P Martin, MPH Stumpf Current Biology 26 (15), 1975-1989, 2016 | 67 | 2016 |
| Information theory and signal transduction systems: from molecular information processing to network inference SS Mc Mahon, A Sim, S Filippi, R Johnson, J Liepe, D Smith, MPH Stumpf Seminars in cell & developmental biology 35, 98-108, 2014 | 58 | 2014 |
| Interpretable graph convolutional neural networks for inference on noisy knowledge graphs D Neil, J Briody, A Lacoste, A Sim, P Creed, A Saffari arXiv preprint arXiv:1812.00279, 2018 | 42 | 2018 |
| Inference of random walk models to describe leukocyte migration PJM Jones, A Sim, HB Taylor, L Bugeon, MJ Dallman, B Pereira, ... Physical biology 12 (6), 066001, 2015 | 36 | 2015 |
| Great cities look small A Sim, SN Yaliraki, M Barahona, MPH Stumpf Journal of The Royal Society Interface 12 (109), 20150315, 2015 | 31 | 2015 |
| Nanog fluctuations in embryonic stem cells highlight the problem of measurement in cell biology RCG Smith, PS Stumpf, SJ Ridden, A Sim, S Filippi, HA Harrington, ... Biophysical journal 112 (12), 2641-2652, 2017 | 22 | 2017 |
| Single cell phenotyping reveals heterogeneity among hematopoietic stem cells following infection AL MacLean, MA Smith, J Liepe, A Sim, R Khorshed, NM Rashidi, ... Stem Cells 35 (11), 2292-2304, 2017 | 18 | 2017 |
| Directed graph embeddings in pseudo-riemannian manifolds A Sim, ML Wiatrak, A Brayne, P Creed, S Paliwal International Conference on Machine Learning, 9681-9690, 2021 | 15 | 2021 |
| Graph neutral networks with attention P Creed, SIM Aaron, A Alamdari, J Briody, D Neil, A Lacoste US Patent App. 17/041,625, 2021 | 15 | 2021 |
| Accurate reconstruction of cell and particle tracks from 3D live imaging data J Liepe, A Sim, H Weavers, L Ward, P Martin, MPH Stumpf Cell systems 3 (1), 102-107, 2016 | 11 | 2016 |
| Random forests on distance matrices for imaging genetics studies A Sim, D Tsagkrasoulis, G Montana Statistical applications in genetics and molecular biology 12 (6), 757-786, 2013 | 11 | 2013 |
| Attention filtering for multiple instance learning P Creed, AJKJ Sim, ST Spencer, MJ Vilenius US Patent App. 17/041,533, 2021 | 9 | 2021 |
| Contrastive mixture of posteriors for counterfactual inference, data integration and fairness A Foster, Á Vezér, CA Glastonbury, P Creed, S Abujudeh, A Sim International Conference on Machine Learning, 6578-6621, 2022 | 7 | 2022 |
| Goldstein-Kac telegraph processes with random speeds: Path probabilities, likelihoods, and reported Lévy flights A Sim, J Liepe, MPH Stumpf Physical Review E 91 (4), 042115, 2015 | 6 | 2015 |
| Information geometry and sequential Monte Carlo A Sim, S Filippi, MPH Stumpf arXiv preprint arXiv:1212.0764, 2012 | 6 | 2012 |
| Information geometry and sequential Monte Carlo samplers A Sim, S Filippi, MPH Stumpf arXiv preprint ArXiv:1212.0764, 2012 | 5 | 2012 |
| Proxy-based zero-shot entity linking by effective candidate retrieval M Wiatrak, E Arvaniti, A Brayne, J Vetterle, A Sim arXiv preprint arXiv:2301.13318, 2023 | 3 | 2023 |
