Metacoder: An R package for visualization and manipulation of community taxonomic diversity data ZSL Foster, TJ Sharpton, NJ Grünwald PLoS computational biology 13 (2), e1005404, 2017 | 629 | 2017 |
Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing SCK Straub, M Fishbein, T Livshultz, Z Foster, M Parks, K Weitemier, ... BMC genomics 12, 1-22, 2011 | 153 | 2011 |
taxize: Taxonomic information from around the web S Chamberlain, E Szoecs, Z Foster, Z Arendsee, C Boettiger, K Ram, ... R package version 0.9 92, 2020 | 132 | 2020 |
Taxa: An R package implementing data standards and methods for taxonomic data ZSL Foster, S Chamberlain, NJ Grünwald F1000Research 7, 2018 | 37 | 2018 |
A New Oomycete Metabarcoding Method Using the rps10 Gene ZSL Foster, FE Albornoz, VJ Fieland, MM Larsen, FA Jones, BM Tyler, ... Phytobiomes Journal 6 (3), 214-226, 2022 | 21 | 2022 |
Soilborne Phytophthora and Pythium Diversity From Rhododendron in Propagation, Container, and Field Production Systems of the Pacific Northwest JE Weiland, CF Scagel, NJ Grünwald, EA Davis, BR Beck, ZSL Foster, ... Plant disease 104 (6), 1841-1850, 2020 | 20 | 2020 |
The Composition of the Fungal and Oomycete Microbiome of Rhododendron Roots Under Varying Growth Conditions, Nurseries, and Cultivars ZSL Foster, JE Weiland, CF Scagel, NJ Grünwald Phytobiomes journal 4 (2), 156-164, 2020 | 15 | 2020 |
Genetic Differentiation and Clonal Expansion of Chinese Botrytis cinerea Populations from Tomato and Other Crops in China Y Diao, MM Larsen, ZN Kamvar, C Zhang, S Li, W Wang, D Lin, Q Peng, ... Phytopathology 110 (2), 428-439, 2020 | 14 | 2020 |
Openness and computational reproducibility in plant pathology: Where we stand and a way forward AH Sparks, EMD Ponte, KS Alves, ZSL Foster, NJ Grünwald Phytopathology® 113 (7), 1159-1170, 2023 | 4 | 2023 |
Package ‘metacoder’ Z Foster, N Grunwald, R Gilmore Tools for Parsing, 2024 | 2 | 2024 |
Genetic diversity, evolution, and diagnosis of sugarcane yellow leaf virus from 19 sugarcane-producing locations worldwide P Rott, S Grinstead, S Dallot, ZSL Foster, JH Daugrois, E Fernandez, ... Plant Disease 107 (11), 3437-3447, 2023 | 1 | 2023 |
High-quality genome assemblies of Phytophthora ramorum clonal lineages NA1 and EU1 from PacBio sequencing N Carleson, CM Press, Z Foster, N Grunwald Phytopathology 111 (10), 58-58, 2021 | 1 | 2021 |
Krisp: A Python package to aid in the design of CRISPR and amplification-based diagnostic assays from whole genome sequencing data ZSL Foster, AS Tupper, CM Press, NJ Grünwald PLOS Computational Biology 20 (5), e1012139, 2024 | | 2024 |
Metabarcoding for plant pathologists MA Sudermann, ZSL Foster, JH Chang, NJ Grünwald Canadian Journal of Plant Pathology 46 (2), 142-160, 2024 | | 2024 |
Krisp: A python package for designing CRISPR and amplification-based diagnostic assays from whole genome data ZSL Foster, AS Tupper, CM Press, NJ Grunwald bioRxiv, 2023.11. 16.567433, 2023 | | 2023 |
Impact of genetic diversity on diagnosis of sugarcane yellow leaf virus P Rott, S Grinstead, S Dallot, ZSL Foster, JH Daugrois, E Fernandez, ... SFV, 2023 | | 2023 |
Development of the KRISP python tool and validation of a CRISPR Cas diagnostic assay for detection of Phytophthora ramorum CM Press, Z Foster, N Carleson, N Grunwald PHYTOPATHOLOGY 112 (11), 11-11, 2022 | | 2022 |
Development of Computational, Visualization, and Molecular Tools for Fungal and Oomycete Community Ecology ZSL Foster | | 2020 |
Next generation sequencing of oomycete communities in nursery irrigation water J Eberhart, F Funahashi, ZSL Foster, J Parke Proceedings of the sudden oak death sixth science symposium. Gen. Tech. Rep …, 2017 | | 2017 |
Analysis of Microbiome Community Data in R NJ Grünwald, ZSL Foster | | |