| NicheNet: modeling intercellular communication by linking ligands to target genes R Browaeys, W Saelens, Y Saeys Nature methods 17 (2), 159-162, 2020 | 1170 | 2020 |
| Stellate cells, hepatocytes, and endothelial cells imprint the Kupffer cell identity on monocytes colonizing the liver macrophage niche J Bonnardel, W T’Jonck, D Gaublomme, R Browaeys, CL Scott, L Martens, ... Immunity 51 (4), 638-654. e9, 2019 | 473 | 2019 |
| Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches M Guilliams, J Bonnardel, B Haest, B Vanderborght, C Wagner, ... Cell 185 (2), 379-396. e38, 2022 | 471 | 2022 |
| A cellular hierarchy in melanoma uncouples growth and metastasis P Karras, I Bordeu, J Pozniak, A Nowosad, C Pazzi, N Van Raemdonck, ... Nature 610 (7930), 190-198, 2022 | 115 | 2022 |
| TIM3+ TRBV11-2 T cells and IFNγ signature in patrolling monocytes and CD16+ NK cells delineate MIS-C L Hoste, L Roels, L Naesens, V Bosteels, S Vanhee, S Dupont, ... The Journal of experimental medicine 219 (2), 2022 | 80 | 2022 |
| MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data R Browaeys, J Gilis, C Sang-Aram, P De Bleser, L Hoste, S Tavernier, ... BioRxiv, 2023.06. 13.544751, 2023 | 24 | 2023 |
| Spotless, a reproducible pipeline for benchmarking cell type deconvolution in spatial transcriptomics C Sang-Aram, R Browaeys, R Seurinck, Y Saeys Elife 12, RP88431, 2024 | 10 | 2024 |
| ILC3s control splenic cDC homeostasis via lymphotoxin signaling M Vanderkerken, AP Baptista, M De Giovanni, S Fukuyama, R Browaeys, ... The Journal of Experimental Medicine 218 (5), 2021 | 8 | 2021 |
| A complement atlas identifies interleukin-6–dependent alternative pathway dysregulation as a key druggable feature of COVID-19 KFA Van Damme, L Hoste, J Declercq, E De Leeuw, B Maes, L Martens, ... Science Translational Medicine 15 (710), eadi0252, 2023 | 6 | 2023 |
| Interleukin-2 family cytokines IL-9 and IL-21 differentially regulate innate and adaptive type 2 immunity in asthma F Bick, CMB Gómez, I Lammens, J Van Moorleghem, C De Wolf, ... Journal of Allergy and Clinical Immunology, 2024 | | 2024 |
| Unraveling cell-cell communication with NicheNet by inferring active ligands from transcriptomics data C Sang-aram, R Browaeys, R Seurinck, Y Saeys arXiv preprint arXiv:2404.16358, 2024 | | 2024 |
| Spotless, a reproducible pipeline for benchmarking cell type deconvolution in spatial transcriptomics S Chananchida, R Browaeys, S Ruth, S Yvan eLife 12, 2024 | | 2024 |
| Modeling intercellular communication from transcriptomics data by linking ligands to target genes R Browaeys Ghent University, 2023 | | 2023 |
| A cellular hierarchy in melanoma uncouples growth and metastasis (vol 610, pg 190, 2022) P Karras, I Bordeu, J Pozniak, A Nowosad, C Pazzi, N Van Raemdonck, ... Nature 611 (7934), E4-E4, 2022 | | 2022 |
