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Francesco Di Natale
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Capturing phase behavior of ternary lipid mixtures with a refined martini coarse-grained force field
TS Carpenter, CA López, C Neale, C Montour, HI Ingólfsson, F Di Natale, ...
Journal of chemical theory and computation 14 (11), 6050-6062, 2018
772018
A massively parallel infrastructure for adaptive multiscale simulations: modeling RAS initiation pathway for cancer
F Di Natale, H Bhatia, TS Carpenter, C Neale, S Kokkila Schumacher, ...
Supercomputing: The International Conference for High Performance Computing …, 2019
692019
Machine learning–driven multiscale modeling reveals lipid-dependent dynamics of RAS signaling proteins
HI Ingólfsson, C Neale, TS Carpenter, R Shrestha, CA López, TH Tran, ...
Proceedings of the National Academy of Sciences 119 (1), e2113297119, 2022
662022
A community roadmap for scientific workflows research and development
RF Da Silva, H Casanova, K Chard, I Altintas, RM Badia, B Balis, ...
2021 IEEE Workshop on Workflows in Support of Large-Scale Science (WORKS), 81-90, 2021
432021
Enabling machine learning-ready HPC ensembles with Merlin
JL Peterson, B Bay, J Koning, P Robinson, J Semler, J White, R Anirudh, ...
Future Generation Computer Systems 131, 255-268, 2022
292022
Generalizable coordination of large multiscale workflows: challenges and learnings at scale
H Bhatia, F Di Natale, JY Moon, X Zhang, JR Chavez, F Aydin, C Stanley, ...
Proceedings of the International Conference for High Performance Computing …, 2021
272021
Merlin: enabling machine learning-ready HPC ensembles
JL Peterson, K Athey, PT Bremer, V Castillo, F Di Natale, JE Field, D Fox, ...
Lawrence Livermore National Lab.(LLNL), Livermore, CA (United States), 2019
252019
Workflows community summit: Bringing the scientific workflows community together
RF da Silva, H Casanova, K Chard, D Laney, D Ahn, S Jha, C Goble, ...
arXiv preprint arXiv:2103.09181, 2021
242021
Comparing gpu power and frequency capping: A case study with the mummi workflow
T Patki, Z Frye, H Bhatia, F Di Natale, J Glosli, H Ingolfsson, B Rountree
2019 IEEE/ACM Workflows in Support of Large-Scale Science (WORKS), 31-39, 2019
232019
Machine learning-driven multiscale modeling: bridging the scales with a next-generation simulation infrastructure
HI Ingólfsson, H Bhatia, F Aydin, T Oppelstrup, CA López, LG Stanton, ...
Journal of Chemical Theory and Computation 19 (9), 2658-2675, 2023
192023
Workflows community summit: Advancing the state-of-the-art of scientific workflows management systems research and development
RF da Silva, H Casanova, K Chard, T Coleman, D Laney, D Ahn, S Jha, ...
arXiv preprint arXiv:2106.05177, 2021
182021
Maestro workflow conductor
F Di Natale
Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States), 2017
18*2017
Exploring CRD mobility during RAS/RAF engagement at the membrane
K Nguyen, CA López, C Neale, QN Van, TS Carpenter, F Di Natale, ...
Biophysical Journal 121 (19), 3630-3650, 2022
122022
Asynchronous reciprocal coupling of Martini 2.2 coarse-grained and CHARMM36 all-atom simulations in an automated multiscale framework
CA López, X Zhang, F Aydin, R Shrestha, QN Van, CB Stanley, ...
Journal of Chemical Theory and Computation 18 (8), 5025-5045, 2022
82022
DFMan: A graph-based optimization of dataflow scheduling on high-performance computing systems
F Chowdhury, F Di Natale, A Moody, K Mohror, W Yu
2022 IEEE International Parallel and Distributed Processing Symposium (IPDPS …, 2022
82022
Emulating I/O behavior in scientific workflows on high performance computing systems
F Chowdhury, Y Zhu, F Di Natale, A Moody, E Gonsiorowski, K Mohror, ...
2020 IEEE/ACM Fifth International Parallel Data Systems Workshop (PDSW), 34-39, 2020
72020
Scalable composition and analysis techniques for massive scientific workflows
DH Ahn, X Zhang, J Mast, S Herbein, F Di Natale, D Kirshner, SA Jacobs, ...
2022 IEEE 18th International Conference on e-Science (e-Science), 32-43, 2022
42022
Understanding I/O Behavior in Scientific Workflows on High Performance Computing Systems
F Chowdhury, F Di Natale, A Moody, E Gonsiorowski, K Mohror, W Yu
Proceedings of the International Conference on High Performance Computing …, 2019
22019
Multiscale Machine-Learned Modeling Infrastructure RAS
JY Moon, F Di Natale, HI Ingolfsson, H Bhatia, JR Chavez
Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States), 2021
12021
Adaptable coordination of large multiscale ensembles: challenges and learnings at scale
H Bhatia, F Di Natale, JY Moon, X Zhang, JR Chavez, F Aydin, C Stanley, ...
Lawrence Livermore National Lab.(LLNL), Livermore, CA (United States), 2021
12021
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