| Three-dimensional printing of Hela cells for cervical tumor model in vitro Y Zhao, R Yao, L Ouyang, H Ding, T Zhang, K Zhang, S Cheng, W Sun Biofabrication 6 (3), 035001, 2014 | 580 | 2014 |
| Quantitative assessment of protein activity in orphan tissues and single cells using the metaVIPER algorithm H Ding, EF Douglass Jr, AM Sonabend, A Mela, S Bose, C Gonzalez, ... Nature communications 9 (1), 1471, 2018 | 116 | 2018 |
| Bone marrow myeloid cells regulate myeloid-biased hematopoietic stem cells via a histamine-dependent feedback loop X Chen, H Deng, MJ Churchill, LL Luchsinger, X Du, TH Chu, ... Cell stem cell 21 (6), 747-760. e7, 2017 | 89 | 2017 |
| VEGA is an interpretable generative model for inferring biological network activity in single-cell transcriptomics L Seninge, I Anastopoulos, H Ding, J Stuart Nature communications 12 (1), 5684, 2021 | 70 | 2021 |
| BACH2 inhibition reverses β cell failure in type 2 diabetes models J Son, H Ding, TB Farb, AM Efanov, J Sun, JL Gore, SK Syed, Z Lei, ... The Journal of clinical investigation 131 (24), 2021 | 50 | 2021 |
| Biological process activity transformation of single cell gene expression for cross-species alignment H Ding, A Blair, Y Yang, JM Stuart Nature communications 10 (1), 4899, 2019 | 42 | 2019 |
| Airway basal cells show regionally distinct potential to undergo metaplastic differentiation Y Zhou, Y Yang, L Guo, J Qian, J Ge, D Sinner, H Ding, A Califano, ... Elife 11, e80083, 2022 | 24 | 2022 |
| Concerted modification of nucleotides at functional centers of the ribosome revealed by single-molecule RNA modification profiling AD Bailey, J Talkish, H Ding, H Igel, A Duran, S Mantripragada, B Paten, ... Elife 11, e76562, 2022 | 23 | 2022 |
| Gaussian mixture model-based unsupervised nucleotide modification number detection using nanopore-sequencing readouts H Ding, AD Bailey IV, M Jain, H Olsen, B Paten Bioinformatics 36 (19), 4928-4934, 2020 | 23 | 2020 |
| Genetic and pharmacologic inhibition of ALDH1A3 as a treatment of β-cell failure J Son, W Du, M Esposito, K Shariati, H Ding, Y Kang, D Accili Nature communications 14 (1), 558, 2023 | 16 | 2023 |
| iterClust: a statistical framework for iterative clustering analysis H Ding, W Wang, A Califano Bioinformatics 34 (16), 2865-2866, 2018 | 15 | 2018 |
| Patient-Driven Discovery, Therapeutic Targeting, and Post-Clinical Validation of a Novel AKT1 Fusion–Driven Cancer EK Slotkin, D Diolaiti, NN Shukla, FS Dela Cruz, JJ Clark, G Gundem, ... Cancer discovery 9 (5), 605-616, 2019 | 11 | 2019 |
| Towards inferring nanopore sequencing ionic currents from nucleotide chemical structures H Ding, I Anastopoulos, AD Bailey IV, J Stuart, B Paten Nature Communications 12 (1), 6545, 2021 | 9 | 2021 |
| Notch-mediated Ephrin signaling disrupts islet architecture and β cell function A Bartolomé, N Suda, J Yu, C Zhu, J Son, H Ding, A Califano, D Accili, ... JCI insight 7 (6), 2022 | 8 | 2022 |
| Prioritizing transcriptional factors in gene regulatory networks with PageRank H Ding, Y Yang, Y Xue, L Seninge, H Gong, R Safavi, A Califano, ... Iscience 24 (1), 2021 | 6 | 2021 |
| AFF3 and BACH2 are master regulators of metabolic inflexibility, β/α-cell transition, and dedifferentiation in type 2 diabetes J Son, H Ding, D Accii, A Califano bioRxiv, 768135, 2019 | 6 | 2019 |
| Single-cell based elucidation of molecularly-distinct glioblastoma states and drug sensitivity H Ding, DM Burgenske, W Zhao, PS Subramaniam, KK Bakken, L He, ... bioRxiv, 675439, 2019 | 6 | 2019 |
| Biological network-inspired interpretable variational autoencoder L Seninge, I Anastopoulos, H Ding, J Stuart bioRxiv, 2020.12. 17.423310, 2020 | 4 | 2020 |
| β-cell Jagged1 is sufficient but not necessary for islet Notch activity and insulin secretory defects in obese mice N Suda, A Bartolomé, J Liang, J Son, Y Yagishita, C Siebel, D Accili, ... Molecular Metabolism 81, 101894, 2024 | 2 | 2024 |
| Single Cell Analysis of Lung Lymphatic Endothelial Cells and Lymphatic Responses during Influenza Infection J Ge, H Shao, H Ding, Y Huang, X Wu, J Sun, J Que Journal of respiratory biology and translational medicine 1 (1), 2024 | 1 | 2024 |
