| UVB-induced tumor heterogeneity diminishes immune response in melanoma Y Wolf*, O Bartok*, S Patkar**, GB Eli**, S Cohen**, K Litchfield**, R Levy, ... Cell 179 (1), 219-235. e21, 2019 | 363 | 2019 |
| Immunoproteasome expression is associated with better prognosis and response to checkpoint therapies in melanoma S Kalaora, JS Lee, E Barnea, R Levy, P Greenberg, M Alon, G Yagel, ... Nature communications 11 (1), 896, 2020 | 137 | 2020 |
| Combined analysis of antigen presentation and T-cell recognition reveals restricted immune responses in melanoma S Kalaora, Y Wolf, T Feferman, E Barnea, E Greenstein, D Reshef, I Tirosh, ... Cancer discovery 8 (11), 1366-1375, 2018 | 96 | 2018 |
| Deconvolving clinically relevant cellular immune crosstalk from bulk gene expression using CODEFACS and LIRICS stratifies melanoma patients to anti-PD-1 therapy K Wang*, S Patkar*, JS Lee, EM Gertz, W Robinson, F Schischlik, ... Cancer Discovery, 2022 | 47 | 2022 |
| PD-L1 recruits phospholipase C and enhances tumorigenicity of lung tumors harboring mutant forms of EGFR S Ghosh, NB Nataraj, A Noronha, S Patkar, A Sekar, S Mukherjee, ... Cell reports 35 (8), 2021 | 34 | 2021 |
| Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies S Patkar*, K Heselmeyer-Haddad*, N Auslander*, D Hirsch, J Camps, ... Genome medicine 13 (1), 1-16, 2021 | 21* | 2021 |
| User attitudes on direct-to-consumer genetic testing D Saha, A Chan, B Stacy, K Javkar, S Patkar, ML Mazurek 2020 IEEE European Symposium on Security and Privacy (EuroS&P), 120-138, 2020 | 19 | 2020 |
| A network diffusion approach to inferring sample-specific function reveals functional changes associated with breast cancer S Patkar, A Magen, R Sharan, S Hannenhalli PLoS computational biology 13 (11), e1005793, 2017 | 14 | 2017 |
| Deep domain adversarial learning for species-agnostic classification of histologic subtypes of osteosarcoma S Patkar, J Beck, S Harmon, C Mazcko, B Turkbey, P Choyke, GT Brown, ... The American journal of pathology 193 (1), 60-72, 2023 | 8 | 2023 |
| Patterns of metastatic progression and association with clinical outcomes in canine osteosarcoma: A necropsy study of 83 dogs KI Silver, S Patkar, C Mazcko, EP Berger, JA Beck, AK LeBlanc Veterinary and comparative oncology, 0 | 6* | |
| Combined Analysis of Antigen Presentation and T-cell Recognition Reveals Restricted Immune Responses in Melanoma. Cancer Discov. 8: 1366–1375. doi: 10.1158/2159-8290 S Kalaora, Y Wolf, T Feferman, E Barnea, E Greenstein, D Reshef, I Tirosh, ... CD-17-1418, 2018 | 5 | 2018 |
| A selective CutMix approach improves generalizability of deep learning-based grading and risk assessment of prostate cancer S Patkar, S Harmon, I Sesterhenn, R Lis, M Merino, D Young, GT Brown, ... Journal of Pathology Informatics 15, 100381, 2024 | 2 | 2024 |
| An optimization framework for network annotation S Patkar, R Sharan Bioinformatics 34 (13), i502-i508, 2018 | 2 | 2018 |
| Deactivation of ligand-receptor interactions enhancing lymphocyte infiltration drives melanoma resistance to Immune Checkpoint Blockade S Sahni, B Wang, D Wu, SR Dhruba, M Nagy, S Patkar, I Ferreira, K Wang, ... bioRxiv, 2023 | 1 | 2023 |
| Methods of identifying cell-type-specific gene expression levels by deconvolving bulk gene expression K Wang, S Patkar, JS Lee, E Ruppin, A Schaffer US Patent App. 17/780,356, 2023 | 1 | 2023 |
| Author Correction: Predicting the tumor microenvironment composition and immunotherapy response in non-small cell lung cancer from digital histopathology images S Patkar, A Chen, A Basnet, A Bixby, R Rajendran, R Chernet, S Faso, ... npj Precision Oncology 9 (1), 6, 2025 | | 2025 |
| Predicting the tumor microenvironment composition and immunotherapy response in non-small cell lung cancer from digital histopathology images S Patkar, A Chen, A Basnet, A Bixby, R Rajendran, R Chernet, S Faso, ... NPJ Precision Oncology 8 (1), 280, 2024 | | 2024 |
| Large-Scale Comparative Analysis of Canine and Human Osteosarcomas Uncovers Conserved Clinically Relevant Tumor Microenvironment Subtypes S Patkar, J Mannheimer, SA Harmon, CJ Ramirez, CN Mazcko, ... Clinical Cancer Research 30 (24), 5630-5642, 2024 | | 2024 |
| Masked Image Modeling Meets Self-Distillation: A Transformer-Based Prostate Gland Segmentation Framework for Pathology Slides H Zhang, S Patkar, R Lis, MJ Merino, PA Pinto, PL Choyke, B Turkbey, ... Cancers 16 (23), 3897, 2024 | | 2024 |
| 77 Predicting the tumor microenvironment molecular composition to assess immunotherapy efficacy in non-small cell lung cancer from digital histopathology images AH Chen, S Patkar, A Basnet, A Bixby, R Rajendran, R Chernet, S Faso, ... Journal for ImmunoTherapy of Cancer 12 (Suppl 2), 2024 | | 2024 |
Eytan RuppinChief, Cancer Data Science Lab (CDSL), NCI/NIH在 nih.gov 的电子邮件经过验证
