miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions CH Chou, S Shrestha, CD Yang, NW Chang, YL Lin, KW Liao, WC Huang, ... Nucleic acids research 46 (D1), D296-D302, 2018 | 1711 | 2018 |
miRTarBase 2020: updates to the experimentally validated microRNA–target interaction database HY Huang, YCD Lin, J Li, KY Huang, S Shrestha, HC Hong, Y Tang, ... Nucleic acids research 48 (D1), D148-D154, 2020 | 1210 | 2020 |
miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database CH Chou, NW Chang, S Shrestha, SD Hsu, YL Lin, WH Lee, CD Yang, ... Nucleic acids research 44 (D1), D239-D247, 2016 | 1121 | 2016 |
miRTarBase update 2022: an informative resource for experimentally validated miRNA–target interactions HY Huang, YCD Lin, S Cui, Y Huang, Y Tang, J Xu, J Bao, Y Li, J Wen, ... Nucleic acids research 50 (D1), D222-D230, 2022 | 431 | 2022 |
sRNAMap: genomic maps for small non-coding RNAs, their regulators and their targets in microbial genomes HY Huang, HY Chang, CH Chou, CP Tseng, SY Ho, CD Yang, YW Ju, ... Nucleic acids research 37 (suppl_1), D150-D154, 2009 | 105 | 2009 |
CRP represses the CRISPR/Cas system in Escherichia coli: evidence that endogenous CRISPR spacers impede phage P1 replication CD Yang, YH Chen, HY Huang, HD Huang, CP Tseng Molecular Microbiology 92 (5), 1072-1091, 2014 | 65 | 2014 |
Integrated MicroRNA–mRNA Analysis Reveals miR-204 Inhibits Cell Proliferation in Gastric Cancer by Targeting CKS1B, CXCL1 and GPRC5A S Shrestha, CD Yang, HC Hong, CH Chou, CS Tai, MY Chiew, WL Chen, ... International Journal of Molecular Sciences 19 (1), 87, 2017 | 44 | 2017 |
Negative Effect of Glucose on ompA mRNA Stability: a Potential Role of Cyclic AMP in the Repression of hfq in Escherichia coli HH Lin, CC Hsu, CD Yang, YW Ju, YP Chen, CP Tseng Journal of bacteriology 193 (20), 5833-5840, 2011 | 35 | 2011 |
MethHC 2.0: information repository of DNA methylation and gene expression in human cancer HY Huang, J Li, Y Tang, YX Huang, YG Chen, YY Xie, ZY Zhou, XY Chen, ... Nucleic acids research 49 (D1), D1268-D1275, 2021 | 30 | 2021 |
PredCRP: predicting and analysing the regulatory roles of CRP from its binding sites in Escherichia coli MJ Tsai, JR Wang, CD Yang, KC Kao, WL Huang, HY Huang, CP Tseng, ... Scientific reports 8 (1), 951, 2018 | 28 | 2018 |
Enzyme activity of natural products on cytochrome P450 HL Zuo, HY Huang, YCD Lin, XX Cai, XJ Kong, DL Luo, YH Zhou, ... Molecules 27 (2), 515, 2022 | 27 | 2022 |
Pilot study to establish a novel five-gene biomarker panel for predicting lymph node metastasis in patients with early stage endometrial cancer CY Huang, KW Liao, CH Chou, S Shrestha, CD Yang, MY Chiew, ... Frontiers in Oncology 9, 1508, 2020 | 19 | 2020 |
Regulatory role of cAMP receptor protein over Escherichia coli fumarase genes YP Chen, HH Lin, CD Yang, SH Huang, CP Tseng Journal of Microbiology 50, 426-433, 2012 | 12 | 2012 |
The challenges and opportunities of traditional Chinese medicines against COVID-19: a way out from a network perspective H Zuo, YCD Lin, HY Huang, X Wang, Y Tang, Y Hu, X Kong, Q Chen, ... Acta Pharmacologica Sinica 42 (6), 845-847, 2021 | 10 | 2021 |
Large-scale functional analysis of CRP-mediated feed-forward loops CD Yang, HY Huang, S Shrestha, YH Chen, HD Huang, CP Tseng International Journal of Molecular Sciences 19 (8), 2335, 2018 | 10 | 2018 |
GeNOSA: inferring and experimentally supporting quantitative gene regulatory networks in prokaryotes YH Chen, CD Yang, CP Tseng, HD Huang, SY Ho Bioinformatics 31 (13), 2151-2158, 2015 | 8 | 2015 |
Cinnamomi ramulus inhibits cancer cells growth by inducing G2/M arrest J Li, HY Huang, YCD Lin, H Zuo, Y Tang, HD Huang Frontiers in pharmacology 14, 1121799, 2023 | 7 | 2023 |
Multi-omics profiling reveals microRNA-mediated insulin signaling networks YCD Lin, HY Huang, S Shrestha, CH Chou, YH Chen, CR Chen, ... BMC bioinformatics 21, 1-19, 2020 | 6 | 2020 |
Gene expression profiling of tumor-associated macrophages after exposure to single-dose irradiation WH Kung, CF Yu, ACL Lee, CD Yang, YC Liu, FH Chen, HD Huang Computational biology and chemistry 69, 138-146, 2017 | 5 | 2017 |
A robust drug–target interaction prediction framework with capsule network and transfer learning Y Huang, HY Huang, Y Chen, YCD Lin, L Yao, T Lin, J Leng, Y Chang, ... International Journal of Molecular Sciences 24 (18), 14061, 2023 | 4 | 2023 |