ADMETlab 2.0: an integrated online platform for accurate and comprehensive predictions of ADMET properties G Xiong, Z Wu, J Yi, L Fu, Z Yang, C Hsieh, M Yin, X Zeng, C Wu, A Lu, ... Nucleic acids research 49 (W1), W5-W14, 2021 | 1263 | 2021 |
deepDR: a network-based deep learning approach to in silico drug repositioning X Zeng, S Zhu, X Liu, Y Zhou, R Nussinov, F Cheng Bioinformatics 35 (24), 5191-5198, 2019 | 390 | 2019 |
A comprehensive overview and evaluation of circular RNA detection tools X Zeng, W Lin, M Guo, Q Zou PLoS computational biology 13 (6), e1005420, 2017 | 356 | 2017 |
Integrative approaches for predicting microRNA function and prioritizing disease-related microRNA using biological interaction networks X Zeng, X Zhang, Q Zou Briefings in bioinformatics 17 (2), 193–203, 2016 | 351 | 2016 |
Inferring microRNA-disease associations by random walk on a heterogeneous network with multiple data sources Y Liu, X Zeng, Z He, Q Zou IEEE/ACM Transactions on Computational Biology and Bioinformatics 14 (4 …, 2017 | 293 | 2017 |
KGNN: Knowledge Graph Neural Network for Drug-Drug Interaction Prediction X Lin, Z Quan, ZJ Wang, T Ma, X Zeng IJCAI, 2020 | 283 | 2020 |
Similarity computation strategies in the microRNA-disease network: a survey Q Zou, J Li, L Song, X Zeng, G Wang Briefings in functional genomics 15 (1), 55-64, 2016 | 266 | 2016 |
Target identification among known drugs by deep learning from heterogeneous networks X Zeng, S Zhu, W Lu, Z Liu, J Huang, Y Zhou, J Fang, Y Huang, H Guo, ... Chemical Science 11 (7), 1775-1797, 2020 | 256 | 2020 |
Sequence clustering in bioinformatics: an empirical study Q Zou, G Lin, X Jiang, X Liu, X Zeng Briefings in bioinformatics 21 (1), 1-10, 2020 | 234 | 2020 |
Prediction of potential disease-associated microRNAs using structural perturbation method X Zeng, L Liu, L Lü, Q Zou Bioinformatics, bty112, 2018 | 230 | 2018 |
Prediction and validation of disease genes using HeteSim Scores X ZENG, Y LIAO, Q Zou IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2017 | 223 | 2017 |
Repurpose open data to discover therapeutics for COVID-19 using deep learning X Zeng, X Song, T Ma, X Pan, Y Zhou, Y Hou, Z Zhang, K Li, G Karypis, ... Journal of proteome research 19 (11), 4624-4636, 2020 | 222 | 2020 |
nDNA-prot: identification of DNA-binding proteins based on unbalanced classification L Song, D Li, X Zeng, Y Wu, L Guo, Q Zou BMC bioinformatics 15, 1-10, 2014 | 186 | 2014 |
Toward better drug discovery with knowledge graph X Zeng, X Tu, Y Liu, X Fu, Y Su Current opinion in structural biology 72, 114-126, 2022 | 172 | 2022 |
Pretata: predicting TATA binding proteins with novel features and dimensionality reduction strategy Q Zou, S Wan, Y Ju, J Tang, X Zeng BMC systems biology 10, 401-412, 2016 | 163 | 2016 |
Deterministic solutions to QSAT and Q3SAT by spiking neural P systems with pre-computed resources TO Ishdorj, A Leporati, L Pan, X Zeng, X Zhang Theoretical Computer Science 411 (25), 2345-2358, 2010 | 160 | 2010 |
Application of deep learning methods in biological networks S Jin, X Zeng, F Xia, W Huang, X Liu Briefings in bioinformatics 22 (2), 1902-1917, 2021 | 146 | 2021 |
Identifying enhancer–promoter interactions with neural network based on pre-trained DNA vectors and attention mechanism Z Hong, X Zeng, L Wei, X Liu Bioinformatics 36 (4), 1037-1043, 2020 | 140 | 2020 |
Meta-path methods for prioritizing candidate disease miRNAs X Zhang, Q Zou, A Rodriguez-Paton, X Zeng IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2019 | 138 | 2019 |
Spiking neural P systems with thresholds X Zeng, X Zhang, T Song, L Pan Neural computation 26 (7), 1340-1361, 2014 | 136 | 2014 |