A primer to frequent itemset mining for bioinformatics S Naulaerts, P Meysman, W Bittremieux, TN Vu, WV Berghe, B Goethals, ... Briefings in bioinformatics 16 (2), 216-231, 2015 | 170 | 2015 |
Detection of Enriched T Cell Epitope Specificity in Full T Cell Receptor Sequence Repertoires S Gielis, P Moris, W Bittremieux, N De Neuter, B Ogunjimi, K Laukens, ... Frontiers in Immunology 10, 2820, 2019 | 167* | 2019 |
Current challenges for unseen-epitope TCR interaction prediction and a new perspective derived from image classification P Moris, J De Pauw, A Postovskaya, S Gielis, N De Neuter, W Bittremieux, ... Briefings in Bioinformatics, 2020 | 118* | 2020 |
Plasma donor-derived cell-free DNA kinetics after kidney transplantation using a single tube multiplex PCR assay EM Gielis, C Beirnaert, A Dendooven, P Meysman, K Laukens, ... PloS one 13 (12), e0208207, 2018 | 113 | 2018 |
The use of plasma donor-derived, cell-free DNA to monitor acute rejection after kidney transplantation EM Gielis, KJ Ledeganck, A Dendooven, P Meysman, C Beirnaert, ... Nephrology Dialysis Transplantation, 2019 | 85 | 2019 |
Fast open modification spectral library searching through approximate nearest neighbor indexing W Bittremieux, P Meysman, WS Noble, K Laukens Journal of proteome research 17 (10), 3463-3474, 2018 | 79 | 2018 |
On the feasibility of mining CD8+ T cell receptor patterns underlying immunogenic peptide recognition N De Neuter, W Bittremieux, C Beirnaert, B Cuypers, A Mrzic, P Moris, ... Immunogenetics 70 (3), 159-168, 2018 | 75 | 2018 |
COLOMBOS v3. 0: leveraging gene expression compendia for cross-species analyses M Moretto, P Sonego, N Dierckxsens, M Brilli, L Bianco, ... Nucleic acids research 44 (D1), D620-D623, 2016 | 63 | 2016 |
On the viability of unsupervised T-cell receptor sequence clustering for epitope preference P Meysman, N De Neuter, S Gielis, D Bui Thi, B Ogunjimi, K Laukens Bioinformatics 35 (9), 1461-1468, 2019 | 59 | 2019 |
Use of structural DNA properties for the prediction of transcription-factor binding sites in Escherichia coli P Meysman, TH Dang, K Laukens, R De Smet, Y Wu, K Marchal, ... Nucleic Acids Research 39 (2), e6-e6, 2011 | 55 | 2011 |
Transcriptome profiling in blood before and after hepatitis B vaccination shows significant differences in gene expression between responders and non-responders E Bartholomeus, N De Neuter, P Meysman, A Suls, N Keersmaekers, ... Vaccine 36 (42), 6282-6289, 2018 | 53 | 2018 |
Grasping frequent subgraph mining for bioinformatics applications A Mrzic, P Meysman, W Bittremieux, P Moris, B Cule, B Goethals, ... BioData mining 11, 1-24, 2018 | 52 | 2018 |
Benchmarking solutions to the T-cell receptor epitope prediction problem: IMMREP22 workshop report P Meysman, J Barton, B Bravi, L Cohen-Lavi, V Karnaukhov, E Lilleskov, ... ImmunoInformatics 9, 100024, 2023 | 50 | 2023 |
speaq 2.0: a complete workflow for high-throughput 1D NMR spectra processing and quantification C Beirnaert, P Meysman, TN Vu, N Hermans, S Apers, L Pieters, A Covaci, ... PLoS computational biology 14 (3), e1006018, 2018 | 49 | 2018 |
Mining Association Rules in Graphs Based on Frequent Cohesive Itemsets T Hendrickx, B Cule, P Meysman, S Naulaerts, K Laukens, B Goethals Pacific-Asia Conference on Knowledge Discovery and Data Mining, 637-648, 2015 | 48 | 2015 |
Soft skills: an important asset acquired from organizing regional student group activities J de Ridder, P Meysman, O Oluwagbemi, T Abeel PLoS Computational Biology 10 (7), e1003708, 2014 | 44 | 2014 |
COLOMBOS v2. 0: an ever expanding collection of bacterial expression compendia P Meysman, P Sonego, L Bianco, Q Fu, D Ledezma-Tejeida, ... Nucleic acids research 42 (D1), D649-D653, 2014 | 44 | 2014 |
MESSAR: Automated recommendation of metabolite substructures from tandem mass spectra Y Liu, A Mrzic, P Meysman, T De Vijlder, EP Romijn, D Valkenborg, ... PloS one 15 (1), e0226770, 2020 | 43 | 2020 |
Structural properties of prokaryotic promoter regions correlate with functional features P Meysman, J Collado-Vides, E Morett, R Viola, K Engelen, K Laukens PloS ONE 9 (2), e88717, 2014 | 41 | 2014 |
Multidisciplinary study of the secondary immune response in grandparents re-exposed to chickenpox B Ogunjimi, J Van den Bergh, P Meysman, S Heynderickx, K Bergs, ... Scientific Reports 7 (1), 1077, 2017 | 40 | 2017 |