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Matthieu Vignes
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Gene regulatory network reconstruction using Bayesian networks, the Dantzig Selector, the Lasso and their meta-analysis
M Vignes, J Vandel, D Allouche, N Ramadan-Alban, C Cierco-Ayrolles, ...
PloS one 6 (12), e29165, 2011
1352011
The dynamics of root meristem distribution in the soil
L Dupuy, M Vignes, BM McKenzie, PJ White
Plant, cell & environment 33 (3), 358-369, 2010
452010
Gene clustering via integrated Markov models combining individual and pairwise features
M Vignes, F Forbes
IEEE/ACM Transactions on Computational Biology and Bioinformatics 6 (2), 260-270, 2008
352008
Gene regulatory networks: a primer in biological processes and statistical modelling
O Angelin-Bonnet, PJ Biggs, M Vignes
Gene regulatory networks: Methods and protocols, 347-383, 2019
232019
Bridging physiological and evolutionary time‐scales in a gene regulatory network
G Marchand, VA Huynh‐Thu, NC Kane, S Arribat, D Varès, D Rengel, ...
New Phytologist 203 (2), 685-696, 2014
202014
A multi-objective genetic algorithm to find active modules in multiplex biological networks
EM Novoa-del-Toro, E Mezura-Montes, M Vignes, M Térézol, F Magdinier, ...
PLoS computational biology 17 (8), e1009263, 2021
172021
Identifying health status in grazing dairy cows from milk mid-infrared spectroscopy by using machine learning methods
B Contla Hernández, N Lopez-Villalobos, M Vignes
Animals 11 (8), 2154, 2021
172021
A model-based approach to gene clustering with missing observation reconstruction in a Markov random field framework
J Blanchet, M Vignes
Journal of Computational Biology 16 (3), 475-486, 2009
142009
Exact and approximate inference in graphical models: variable elimination and beyond
N Peyrard, MJ Cros, S de Givry, A Franc, S Robin, R Sabbadin, T Schiex, ...
arXiv preprint arXiv:1506.08544, 2015
132015
The African swine fever modelling challenge: Model comparison and lessons learnt
P Ezanno, S Picault, S Bareille, G Beaunée, GJ Boender, EA Dankwa, ...
Epidemics 40, 100615, 2022
122022
Sparse regression and support recovery with L2-Boosting algorithms
M Champion, C Cierco-Ayrolles, S Gadat, M Vignes
Journal of Statistical Planning and Inference 155, 19-41, 2014
122014
A panel of learning methods for the reconstruction of gene regulatory networks in a systems genetics context
D Allouche, C Cierco-Ayrolles, S Givry, G Guillermin, B Mangin, T Schiex, ...
Gene Network Inference: Verification of Methods for Systems Genetics Data, 9-31, 2014
122014
An algorithm for the simulation of the growth of root systems on deformable domains
LX Dupuy, M Vignes
Journal of Theoretical Biology 310, 164-174, 2012
122012
Inferring networks from multiple samples with consensus lasso
N Villa-Vialaneix, M Vignes, N Viguerie, MS Cristobal
Quality technology & quantitative management 11 (1), 39-60, 2014
102014
Inferring large graphs using -penalized likelihood
M Champion, V Picheny, M Vignes
Statistics and Computing 28 (4), 905-921, 2018
92018
Exact or approximate inference in graphical models: why the choice is dictated by the treewidth, and how variable elimination can be exploited
N Peyrard, MJ Cros, S de Givry, A Franc, S Robin, R Sabbadin, T Schiex, ...
Australian & New Zealand Journal of Statistics 61 (2), 89-133, 2019
62019
Causal queries from observational data in biological systems via Bayesian networks: an empirical study in small networks
A White, M Vignes
Gene Regulatory Networks: Methods and Protocols, 111-142, 2019
52019
Combined expression data with missing values and gene interaction network analysis: a Markovian integrated approach
J Blanchet, M Vignes
2007 IEEE 7th International Symposium on BioInformatics and BioEngineering …, 2007
52007
Evaluation of the accuracy of the IDvet serological test for Mycoplasma bovis infection in cattle using latent class analysis of paired serum ELISA and quantitative real-time …
N Marquetoux, M Vignes, A Burroughs, E Sumner, K Sawford, G Jones
Plos one 18 (5), e0285598, 2023
42023
Investigating the genetic components of tuber bruising in a breeding population of tetraploid potatoes
O Angelin-Bonnet, S Thomson, M Vignes, PJ Biggs, K Monaghan, ...
BMC Plant Biology 23 (1), 238, 2023
42023
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