| Next-generation diagnostics and disease-gene discovery with the Exomiser D Smedley, JOB Jacobsen, M Jäger, S Köhler, M Holtgrewe, M Schubach, ... Nature protocols 10 (12), 2004-2015, 2015 | 388 | 2015 |
| The SeqAn C++ template library for efficient sequence analysis: A resource for programmers K Reinert, TH Dadi, M Ehrhardt, H Hauswedell, S Mehringer, R Rahn, ... Journal of biotechnology 261, 157-168, 2017 | 127 | 2017 |
| Fast and accurate read mapping with approximate seeds and multiple backtracking E Siragusa, D Weese, K Reinert Nucleic acids research 41 (7), e78-e78, 2013 | 124 | 2013 |
| State-of-the-art in string similarity search and join S Wandelt, D Deng, S Gerdjikov, S Mishra, P Mitankin, M Patil, E Siragusa, ... ACM Sigmod Record 43 (1), 64-76, 2014 | 53 | 2014 |
| DREAM-Yara: an exact read mapper for very large databases with short update time TH Dadi, E Siragusa, VC Piro, A Andrusch, E Seiler, BY Renard, K Reinert Bioinformatics 34 (17), i766-i772, 2018 | 47 | 2018 |
| Approximate string matching for high-throughput sequencing E Siragusa | 31 | 2015 |
| A basic analysis toolkit for biological sequences R Giancarlo, A Siragusa, E Siragusa, F Utro Algorithms for Molecular Biology 2, 1-16, 2007 | 16 | 2007 |
| Haplotype assembly of autotetraploid potato using integer linear programing E Siragusa, N Haiminen, R Finkers, R Visser, L Parida Bioinformatics 35 (18), 3279-3286, 2019 | 12 | 2019 |
| Hierarchically labeled database indexing allows scalable characterization of microbiomes F Utro, N Haiminen, E Siragusa, LJ Gardiner, E Seabolt, R Krishna, ... Iscience 23 (4), 2020 | 7 | 2020 |
| Scalable string similarity search/join with approximate seeds and multiple backtracking E Siragusa, D Weese, K Reinert Proceedings of the Joint EDBT/ICDT 2013 Workshops, 370-374, 2013 | 6 | 2013 |
| Linear time algorithms to construct populations fitting multiple constraint distributions at genomic scales E Siragusa, N Haiminen, F Utro, L Parida IEEE/ACM transactions on computational biology and bioinformatics 16 (4 …, 2017 | 5 | 2017 |
| Taxonomic annotation of variable length metagenomic patterns L Parida, E Siragusa, U Filippo US Patent 11,031,092, 2021 | 1 | 2021 |
| Fast and sensitive read mapping with approximate seeds and multiple backtracking E Siragusa, D Weese, K Reinert arXiv preprint arXiv:1208.4238, 2012 | 1 | 2012 |
| Identification of target content in metagenome sample NS Haiminen, LP Parida, E Siragusa, U Filippo US Patent App. 15/802,874, 2019 | | 2019 |
| Full-Text Indexes for High-Throughput Sequencing D Weese, E Siragusa Algorithms for Next-Generation Sequencing Data: Techniques, Approaches, and …, 2017 | | 2017 |
