| Evidence for dynamically organized modularity in the yeast protein–protein interaction network JDJ Han, N Bertin, T Hao, DS Goldberg, GF Berriz, LV Zhang, D Dupuy, ... Nature 430 (6995), 88-93, 2004 | 2136 | 2004 |
| Determination and inference of eukaryotic transcription factor sequence specificity MT Weirauch, A Yang, M Albu, AG Cote, A Montenegro-Montero, P Drewe, ... Cell 158 (6), 1431-1443, 2014 | 1741 | 2014 |
| Protein interaction mapping in C. elegans using proteins involved in vulval development AJM Walhout, R Sordella, X Lu, JL Hartley, GF Temple, MA Brasch, ... Science 287 (5450), 116-122, 2000 | 1040 | 2000 |
| [34] GATEWAY recombinational cloning: Application to the cloning of large numbers of open reading frames or ORFeomes AJM Walhout, GF Temple, MA Brasch, JL Hartley, MA Lorson, ... Methods in enzymology 328, 575-IN7, 2000 | 829 | 2000 |
| Integrating ‘omic’information: a bridge between genomics and systems biology H Ge, AJM Walhout, M Vidal TRENDS in Genetics 19 (10), 551-560, 2003 | 574 | 2003 |
| Widespread macromolecular interaction perturbations in human genetic disorders N Sahni, S Yi, M Taipale, JIF Bass, J Coulombe-Huntington, F Yang, ... Cell 161 (3), 647-660, 2015 | 569 | 2015 |
| Gene regulatory networks and the role of robustness and stochasticity in the control of gene expression LT MacNeil, AJM Walhout Genome research 21 (5), 645-657, 2011 | 421 | 2011 |
| High-throughput yeast two-hybrid assays for large-scale protein interaction mapping AJM Walhout, M Vidal Methods 24 (3), 297-306, 2001 | 367 | 2001 |
| A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors CA Grove, F De Masi, MI Barrasa, DE Newburger, MJ Alkema, ML Bulyk, ... Cell 138 (2), 314-327, 2009 | 306 | 2009 |
| Diet-induced developmental acceleration independent of TOR and insulin in C. elegans LT MacNeil, E Watson, HE Arda, LJ Zhu, AJM Walhout Cell 153 (1), 240-252, 2013 | 302 | 2013 |
| The interplay between transcription factors and microRNAs in genome‐scale regulatory networks NJ Martinez, AJM Walhout Bioessays 31 (4), 435-445, 2009 | 301 | 2009 |
| A C. elegans genome-scale microRNA network contains composite feedback motifs with high flux capacity NJ Martinez, MC Ow, MI Barrasa, M Hammell, R Sequerra, ... Genes & development 22 (18), 2535-2549, 2008 | 288 | 2008 |
| A gene-centered C. elegans protein-DNA interaction network B Deplancke, A Mukhopadhyay, W Ao, AM Elewa, CA Grove, NJ Martinez, ... Cell 125 (6), 1193-1205, 2006 | 280 | 2006 |
| Chromatin immunoprecipitation (ChIP) coupled to detection by quantitative real-time PCR to study transcription factor binding to DNA in Caenorhabditis elegans A Mukhopadhyay, B Deplancke, AJM Walhout, HA Tissenbaum Nature protocols 3 (4), 698-709, 2008 | 273 | 2008 |
| A gateway-compatible yeast one-hybrid system B Deplancke, D Dupuy, M Vidal, AJM Walhout Genome research 14 (10b), 2093-2101, 2004 | 267 | 2004 |
| Interspecies systems biology uncovers metabolites affecting C. elegans gene expression and life history traits E Watson, LT MacNeil, AD Ritter, LS Yilmaz, AP Rosebrock, AA Caudy, ... Cell 156 (4), 759-770, 2014 | 259 | 2014 |
| Genome-scale spatiotemporal analysis of Caenorhabditis elegans microRNA promoter activity NJ Martinez, MC Ow, JS Reece-Hoyes, MI Barrasa, VR Ambros, ... Genome research 18 (12), 2005-2015, 2008 | 256 | 2008 |
| A compendium of Caenorhabditis elegans regulatory transcription factors: a resource for mapping transcription regulatory networks JS Reece-Hoyes, B Deplancke, J Shingles, CA Grove, IA Hope, ... Genome biology 6, 1-12, 2005 | 247 | 2005 |
| Bacterial metabolism affects the C. elegans response to cancer chemotherapeutics AP García-González, AD Ritter, S Shrestha, EC Andersen, LS Yilmaz, ... Cell 169 (3), 431-441. e8, 2017 | 236 | 2017 |
| Using networks to measure similarity between genes: association index selection JIF Bass, A Diallo, J Nelson, JM Soto, CL Myers, AJM Walhout Nature methods 10 (12), 1169-1176, 2013 | 235 | 2013 |
