CTCF-mediated human 3D genome architecture reveals chromatin topology for transcription Z Tang, OJ Luo, X Li, M Zheng, JJ Zhu, P Szalaj, P Trzaskoma, ... Cell 163 (7), 1611-1627, 2015 | 985 | 2015 |
The energetics and physiological impact of cohesin extrusion L Vian, A Pękowska, SSP Rao, KR Kieffer-Kwon, S Jung, L Baranello, ... Cell 173 (5), 1165-1178. e20, 2018 | 533 | 2018 |
Super-enhancers delineate disease-associated regulatory nodes in T cells OSJJ Vahedi G, Kanno Y, Furumoto Y, Jiang K, Parker SC, Erdos MR, Davis SR ... Nature, 2015 | 379 | 2015 |
Interactome maps of mouse gene regulatory domains reveal basic principles of transcriptional regulation CR Kieffer-Kwon KR, Tang Z, Mathe E, Qian J, Sung MH Cell 155 (7), 1507, 2013 | 347 | 2013 |
B cell super-enhancers and regulatory clusters recruit AID tumorigenic activity Cell 18 (159(7)), 1524-37, 2014 | 275* | 2014 |
The primordial differentiation of tumor-specific memory CD8+ T cells as bona fide responders to PD-1/PD-L1 blockade in draining lymph nodes Q Huang, X Wu, Z Wang, X Chen, L Wang, Y Lu, D Xiong, Q Liu, Y Tian, ... Cell 185 (22), 4049-4066. e25, 2022 | 154 | 2022 |
The tandem duplicator phenotype is a prevalent genome-wide cancer configuration driven by distinct gene mutations F Menghi, FP Barthel, V Yadav, M Tang, B Ji, Z Tang, GW Carter, Y Ruan, ... Cancer cell 34 (2), 197-210. e5, 2018 | 149 | 2018 |
Long-read ChIA-PET for base-pair-resolution mapping of haplotype-specific chromatin interactions X Li, OJ Luo, P Wang, M Zheng, D Wang, E Piecuch, JJ Zhu, SZ Tian, ... Nature protocols 12 (5), 899-915, 2017 | 110 | 2017 |
STAT5-mediated chromatin interactions in superenhancers activate IL-2 highly inducible genes: Functional dissection of the Il2ra gene locus P Li, S Mitra, R Spolski, J Oh, W Liao, Z Tang, F Mo, X Li, EE West, ... Proceedings of the National Academy of Sciences 114 (46), 12111-12119, 2017 | 84 | 2017 |
Spatial transcriptomics prediction from histology jointly through transformer and graph neural networks Y Zeng, Z Wei, W Yu, R Yin, Y Yuan, B Li, Z Tang, Y Lu, Y Yang Briefings in Bioinformatics 23 (5), bbac297, 2022 | 51 | 2022 |
An integrated 3-dimensional genome modeling engine for data-driven simulation of spatial genome organization P Szałaj, Z Tang, P Michalski, MJ Pietal, OJ Luo, M Sadowski, X Li, ... Genome research 26 (12), 1697-1709, 2016 | 47 | 2016 |
3D-GNOME: an integrated web service for structural modeling of the 3D genome P Szalaj, PJ Michalski, P Wróblewski, Z Tang, M Kadlof, G Mazzocco, ... Nucleic acids research 44 (W1), W288-W293, 2016 | 42 | 2016 |
Spatial chromatin architecture alteration by structural variations in human genomes at the population scale M Sadowski, A Kraft, P Szalaj, M Wlasnowolski, Z Tang, Y Ruan, ... Genome biology 20, 1-27, 2019 | 40 | 2019 |
ChIA-PIPE: a fully automated pipeline for comprehensive ChIA-PET data analysis and visualization B Lee, J Wang, L Cai, M Kim, S Namburi, H Tjong, Y Feng, P Wang, ... Science advances 6 (28), eaay2078, 2020 | 25 | 2020 |
3D-GNOME 2.0: a three-dimensional genome modeling engine for predicting structural variation-driven alterations of chromatin spatial structure in the human genome M Wlasnowolski, M Sadowski, T Czarnota, K Jodkowska, P Szalaj, Z Tang, ... Nucleic Acids Research 48 (W1), W170-W176, 2020 | 18 | 2020 |
Chromatin topology reorganization and transcription repression by PML-RARα in acute promyeloid leukemia P Wang, Z Tang, B Lee, JJ Zhu, L Cai, P Szalaj, SZ Tian, M Zheng, ... Genome biology 21, 1-21, 2020 | 14 | 2020 |
Genome-wide histone H3K27 acetylation profiling identified genes correlated with prognosis in papillary thyroid carcinoma L Zhang, D Xiong, Q Liu, Y Luo, Y Tian, X Xiao, Y Sang, Y Liu, S Hong, ... Frontiers in cell and developmental biology 9, 682561, 2021 | 13 | 2021 |
Methods for comparative ChIA-PET and Hi-C data analysis D Capurso, Z Tang, Y Ruan Methods 170, 69-74, 2020 | 13 | 2020 |
The niche-specialist and age-related oral microbial ecosystem: crosstalk with host immune cells in homeostasis D Lin, Q Hu, L Yang, X Zeng, Y Xiao, D Wang, W Dai, H Lu, J Fang, ... Microbial Genomics 8 (6), 000811, 2022 | 7 | 2022 |
PROST: quantitative identification of spatially variable genes and domain detection in spatial transcriptomics Y Liang, G Shi, R Cai, Y Yuan, Z Xie, L Yu, Y Huang, Q Shi, L Wang, J Li, ... Nature Communications 15 (1), 600, 2024 | 2 | 2024 |