In the loop: promoter–enhancer interactions and bioinformatics A Mora, GK Sandve, OS Gabrielsen, R Eskeland Briefings in bioinformatics 17 (6), 980-995, 2016 | 172 | 2016 |
iRefR: an R package to manipulate the iRefIndex consolidated protein interaction database A Mora, IM Donaldson BMC bioinformatics 12, 1-13, 2011 | 61 | 2011 |
Separate and combined effects of DNMT and HDAC inhibitors in treating human multi-drug resistant osteosarcoma HosDXR150 cell line E Capobianco, A Mora, D La Sala, A Roberti, N Zaki, E Badidi, M Taranta, ... PloS one 9 (4), e95596, 2014 | 53 | 2014 |
Automatic cell type identification methods for single-cell RNA sequencing B Xie, Q Jiang, A Mora, X Li Computational and Structural Biotechnology Journal 19, 5874-5887, 2021 | 42 | 2021 |
Popularity and performance of bioinformatics software: the case of gene set analysis C Xie, S Jauhari, A Mora BMC bioinformatics 22, 1-16, 2021 | 39 | 2021 |
Effects of protein interaction data integration, representation and reliability on the use of network properties for drug target prediction A Mora, IM Donaldson BMC bioinformatics 13, 1-17, 2012 | 29 | 2012 |
GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome B Simovski, D Vodák, S Gundersen, D Domanska, A Azab, L Holden, ... Gigascience 6 (7), gix032, 2017 | 24 | 2017 |
A comparative analysis of computational approaches and algorithms for protein subcomplex identification N Zaki, A Mora Scientific reports 4 (1), 4262, 2014 | 20 | 2014 |
iRefScape. A Cytoscape plug-in for visualization and data mining of protein interaction data from iRefIndex S Razick, A Mora, K Michalickova, P Boddie, IM Donaldson BMC bioinformatics 12, 1-13, 2011 | 16 | 2011 |
VEGF-B prevents excessive angiogenesis by inhibiting FGF2/FGFR1 pathway C Lee, R Chen, G Sun, X Liu, X Lin, C He, L Xing, L Liu, LD Jensen, ... Signal Transduction and Targeted Therapy 8 (1), 305, 2023 | 13 | 2023 |
Ensemble inference by integrative cancer networks A Mora, M Taranta, N Zaki, E Badidi, C Cinti, E Capobianco Frontiers in Genetics 5 (59), 2014 | 13 | 2014 |
Chromatin Hubs: A biological and computational outlook A Mora, X Huang, S Jauhari, Q Jiang, X Li Computational and structural biotechnology journal 20, 3796-3813, 2022 | 11 | 2022 |
Gene set analysis methods for the functional interpretation of non-mRNA data—Genomic range and ncRNA data A Mora Briefings in bioinformatics 21 (5), 1495-1508, 2020 | 9 | 2020 |
Epigenetically driven network cooperativity: meta-analysis in multi-drug resistant osteosarcoma A Mora, M Taranta, N Zaki, C Cinti, E Capobianco Journal of Complex Networks 4 (2), 296-317, 2016 | 7 | 2016 |
A survey of protein interaction data and multigenic inherited disorders A Mora, K Michalickova, IM Donaldson BMC bioinformatics 14, 1-19, 2013 | 7 | 2013 |
GREG—studying transcriptional regulation using integrative graph databases S Mei, X Huang, C Xie, A Mora Database 2020, baz162, 2020 | 5 | 2020 |
A comparison of cell-cell interaction prediction tools based on scrna-seq data Z Xie, X Li, A Mora Biomolecules 13 (8), 1211, 2023 | 4 | 2023 |
Prognostic models in coronary artery disease: Cox and network approaches A Mora, R Sicari, L Cortigiani, C Carpeggiani, E Picano, E Capobianco Royal Society Open Science 2 (2), 140270, 2015 | 4 | 2015 |
PDGF-D-induced immunoproteasome activation and cell-cell interactions J Zhang, W Li, Z Xiong, J Zhu, X Ren, S Wang, H Kuang, X Lin, A Mora, ... Computational and Structural Biotechnology Journal 21, 2405-2418, 2023 | 2 | 2023 |
PDGFD switches on stem cell endothelial commitment W Lu, P Xu, B Deng, J Zhang, Y Zhan, X Lin, X Xu, Z Xia, X Yang, X Zeng, ... Angiogenesis 25 (4), 517-533, 2022 | 2 | 2022 |