Differential damage and repair of DNA-adducts induced by anti-cancer drug cisplatin across mouse organs A Yimit, O Adebali, A Sancar, Y Jiang Nature communications 10 (1), 309, 2019 | 176 | 2019 |
Cache domains that are homologous to, but different from PAS domains comprise the largest superfamily of extracellular sensors in prokaryotes AA Upadhyay, AD Fleetwood, O Adebali, RD Finn, IB Zhulin PLoS computational biology 12 (4), e1004862, 2016 | 170 | 2016 |
Dynamic maps of UV damage formation and repair for the human genome J Hu, O Adebali, S Adar, A Sancar Proceedings of the National Academy of Sciences 114 (26), 6758-6763, 2017 | 169 | 2017 |
MiST 3.0: an updated microbial signal transduction database with an emphasis on chemosensory systems VM Gumerov, DR Ortega, O Adebali, LE Ulrich, IB Zhulin Nucleic acids research 48 (D1), D459-D464, 2020 | 151 | 2020 |
Cisplatin-DNA adduct repair of transcribed genes is controlled by two circadian programs in mouse tissues Y Yang, O Adebali, G Wu, CP Selby, YY Chiou, N Rashid, J Hu, ... Proceedings of the National Academy of Sciences 115 (21), E4777-E4785, 2018 | 99 | 2018 |
Human genome-wide repair map of DNA damage caused by the cigarette smoke carcinogen benzo [a] pyrene W Li, J Hu, O Adebali, S Adar, Y Yang, YY Chiou, A Sancar Proceedings of the National Academy of Sciences 114 (26), 6752-6757, 2017 | 96 | 2017 |
Molecular mechanisms and genomic maps of DNA excision repair in Escherichia coli and humans J Hu, CP Selby, S Adar, O Adebali, A Sancar Journal of Biological Chemistry 292 (38), 15588-15597, 2017 | 89 | 2017 |
Genome-wide transcription-coupled repair in Escherichia coli is mediated by the Mfd translocase O Adebali, YY Chiou, J Hu, A Sancar, CP Selby Proceedings of the National Academy of Sciences 114 (11), E2116-E2125, 2017 | 88 | 2017 |
CDvist: a webserver for identification and visualization of conserved domains in protein sequences O Adebali, DR Ortega, IB Zhulin Bioinformatics 31 (9), 1475-1477, 2015 | 65 | 2015 |
Genome-wide mapping of nucleotide excision repair with XR-seq J Hu, W Li, O Adebali, Y Yang, O Oztas, CP Selby, A Sancar Nature protocols 14 (1), 248-282, 2019 | 64 | 2019 |
Genome-wide excision repair in Arabidopsis is coupled to transcription and reflects circadian gene expression patterns O Oztas, CP Selby, A Sancar, O Adebali Nature communications 9 (1), 1503, 2018 | 52 | 2018 |
Single-nucleotide resolution dynamic repair maps of UV damage in Saccharomyces cerevisiae genome W Li, O Adebali, Y Yang, CP Selby, A Sancar Proceedings of the National Academy of Sciences 115 (15), E3408-E3415, 2018 | 52 | 2018 |
Mfd translocase is necessary and sufficient for transcription-coupled repair in Escherichia coli O Adebali, A Sancar, CP Selby Journal of Biological Chemistry 292 (45), 18386-18391, 2017 | 46 | 2017 |
The mutation profile of SARS-CoV-2 is primarily shaped by the host antiviral defense C Azgari, Z Kilinc, B Turhan, D Circi, O Adebali Viruses 13 (3), 394, 2021 | 41 | 2021 |
Establishing the precise evolutionary history of a gene improves prediction of disease-causing missense mutations O Adebali, AO Reznik, DS Ory, IB Zhulin Genetics in Medicine 18 (10), 1029-1036, 2016 | 36 | 2016 |
Phylogenetic Analysis of SARS-CoV-2 Genomes in Turkey O Adebali, A Bircan, D Circi, B Islek, Z Kilinc, B Selcuk, B Turhan Turkish Journal of Biology 44 (3), 146-156, 2020 | 25 | 2020 |
Nucleotide excision repair capacity increases during differentiation of human embryonic carcinoma cells into neurons and muscle cells W Li, W Liu, A Kakoki, R Wang, O Adebali, Y Jiang, A Sancar Journal of Biological Chemistry 294 (15), 5914-5922, 2019 | 20 | 2019 |
SURF1 related Leigh syndrome: Clinical and molecular findings of 16 patients from Turkey M Kose, E Canda, M Kagnici, A Aykut, O Adebali, A Durmaz, A Bircan, ... Molecular Genetics and Metabolism Reports 25, 100657, 2020 | 16 | 2020 |
Aquerium: A web application for comparative exploration of domain‐based protein occurrences on the taxonomically clustered genome tree O Adebali, IB Zhulin Proteins: Structure, Function, and Bioinformatics 85 (1), 72-77, 2017 | 14 | 2017 |
Class III histidine kinases: a recently accessorized kinase domain in putative modulators of type IV pilus-based motility O Adebali, MG Petukh, AO Reznik, AV Tishkov, AA Upadhyay, IB Zhulin Journal of Bacteriology 199 (18), 10.1128/jb. 00218-17, 2017 | 12 | 2017 |