Conservation and divergence of methylation patterning in plants and animals S Feng, SJ Cokus, X Zhang, PY Chen, M Bostick, MG Goll, J Hetzel, J Jain, ... Proceedings of the National Academy of Sciences 107 (19), 8689-8694, 2010 | 1345 | 2010 |
Relationship between nucleosome positioning and DNA methylation RK Chodavarapu, S Feng, YV Bernatavichute, PY Chen, H Stroud, Y Yu, ... Nature 466 (7304), 388-392, 2010 | 843 | 2010 |
Profiling genome-wide DNA methylation WS Yong, FM Hsu, PY Chen Epigenetics & chromatin 9, 1-16, 2016 | 399 | 2016 |
BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data W Guo, P Fiziev, W Yan, S Cokus, X Sun, MQ Zhang, PY Chen, ... BMC genomics 14, 1-8, 2013 | 394 | 2013 |
DNA demethylation dynamics in the human prenatal germline S Gkountela, KX Zhang, TA Shafiq, WW Liao, J Hargan-Calvopiña, ... Cell 161 (6), 1425-1436, 2015 | 359 | 2015 |
Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli S Atsumi, TY Wu, IMP Machado, WC Huang, PY Chen, M Pellegrini, ... Molecular systems biology 6 (1), 449, 2010 | 346 | 2010 |
BS Seeker: precise mapping for bisulfite sequencing PY Chen, SJ Cokus, M Pellegrini BMC bioinformatics 11, 1-6, 2010 | 274 | 2010 |
Stage-specific roles for tet1 and tet2 in DNA demethylation in primordial germ cells JJ Vincent, Y Huang, PY Chen, S Feng, JH Calvopiña, K Nee, SA Lee, ... Cell stem cell 12 (4), 470-478, 2013 | 209 | 2013 |
A comparative analysis of DNA methylation across human embryonic stem cell lines PY Chen, S Feng, JWJ Joo, SE Jacobsen, M Pellegrini Genome biology 12, 1-12, 2011 | 122 | 2011 |
Similarity between soybean and Arabidopsis seed methylomes and loss of non-CG methylation does not affect seed development JY Lin, BH Le, M Chen, KF Henry, J Hur, TF Hsieh, PY Chen, JM Pelletier, ... Proceedings of the National Academy of Sciences 114 (45), E9730-E9739, 2017 | 120 | 2017 |
Intrauterine calorie restriction affects placental DNA methylation and gene expression PY Chen, A Ganguly, L Rubbi, LD Orozco, M Morselli, D Ashraf, ... Physiological genomics 45 (14), 565-576, 2013 | 119 | 2013 |
The effects of perinatal testosterone exposure on the DNA methylome of the mouse brain are late-emerging NM Ghahramani, TC Ngun, PY Chen, Y Tian, S Krishnan, S Muir, L Rubbi, ... Biology of sex differences 5, 1-18, 2014 | 118 | 2014 |
Stage-specific demethylation in primordial germ cells safeguards against precocious differentiation J Hargan-Calvopina, S Taylor, H Cook, Z Hu, SA Lee, MR Yen, ... Developmental Cell 39 (1), 75-86, 2016 | 117 | 2016 |
Lung adenocarcinoma and human papillomavirus infection YC Chen, JH Chen, K Richard, PY Chen, DC Christiani Cancer: Interdisciplinary International Journal of the American Cancer …, 2004 | 106 | 2004 |
Deciphering chemotaxis pathways using cross species comparisons R Hamer, PY Chen, JP Armitage, G Reinert, CM Deane BMC systems biology 4, 1-19, 2010 | 94 | 2010 |
Detecting and prioritizing biosynthetic gene clusters for bioactive compounds in bacteria and fungi PN Tran, MR Yen, CY Chiang, HC Lin, PY Chen Applied microbiology and biotechnology 103, 3277-3287, 2019 | 93 | 2019 |
Non-exhaustive DNA methylation-mediated transposon silencing in the black truffle genome, a complex fungal genome with massive repeat element content B Montanini, PY Chen, M Morselli, A Jaroszewicz, D Lopez, F Martin, ... Genome biology 15, 1-16, 2014 | 66 | 2014 |
Global impacts of chromosomal imbalance on gene expression in Arabidopsis and other taxa J Hou, X Shi, C Chen, MS Islam, AF Johnson, T Kanno, B Huettel, MR Yen, ... Proceedings of the National Academy of Sciences 115 (48), E11321-E11330, 2018 | 59 | 2018 |
Prenatal growth patterns and birthweight are associated with differential DNA methylation and gene expression of cardiometabolic risk genes in human placentas: a discovery … PY Chen, A Chu, WW Liao, L Rubbi, C Janzen, FM Hsu, S Thamotharan, ... Reproductive Sciences 25 (4), 523-539, 2018 | 56 | 2018 |
Thermal-responsive genetic and epigenetic regulation of DAM cluster controlling dormancy and chilling requirement in peach floral buds H Zhu, PY Chen, S Zhong, C Dardick, A Callahan, YQ An, S van Knocker, ... Horticulture research 7, 2020 | 53 | 2020 |