| CHARMM-GUI input generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM simulations using the CHARMM36 additive force field J Lee, X Cheng, S Jo, AD MacKerell, JB Klauda, W Im Biophysical journal 110 (3), 641a, 2016 | 2956 | 2016 |
| Oncogenic role of fusion-circRNAs derived from cancer-associated chromosomal translocations J Guarnerio, M Bezzi, JC Jeong, SV Paffenholz, K Berry, MM Naldini, ... Cell 165 (2), 289-302, 2016 | 729 | 2016 |
| Enhanced recursive feature elimination X Chen, JC Jeong Sixth international conference on machine learning and applications (ICMLA …, 2007 | 316 | 2007 |
| On position-specific scoring matrix for protein function prediction J cheol Jeong, X Lin, XW Chen IEEE/ACM transactions on computational biology and bioinformatics 8 (2), 308-315, 2010 | 201 | 2010 |
| Sequence-based prediction of protein interaction sites with an integrative method X Chen, JC Jeong Bioinformatics 25 (5), 585-591, 2009 | 173 | 2009 |
| The molecular basis of breast cancer pathological phenotypes YJ Heng, SC Lester, GMK Tse, RE Factor, KH Allison, LC Collins, ... The Journal of pathology 241 (3), 375-391, 2017 | 120 | 2017 |
| Personalized RNA medicine for pancreatic cancer ME Gilles, L Hao, L Huang, R Rupaimoole, PP Lopez-Casas, E Pulver, ... Clinical Cancer Research 24 (7), 1734-1747, 2018 | 65 | 2018 |
| Extensive rewiring of epithelial-stromal co-expression networks in breast cancer EY Oh, SM Christensen, S Ghanta, JC Jeong, O Bucur, B Glass, ... Genome biology 16, 1-22, 2015 | 60 | 2015 |
| KUPS: constructing datasets of interacting and non-interacting protein pairs with associated attributions X Chen, JC Jeong, P Dermyer Nucleic acids research 39 (suppl_1), D750-D754, 2010 | 44 | 2010 |
| Privacy-preserving deep learning NLP models for cancer registries M Alawad, HJ Yoon, S Gao, B Mumphrey, XC Wu, EB Durbin, JC Jeong, ... IEEE transactions on emerging topics in computing 9 (3), 1219-1230, 2020 | 40 | 2020 |
| Minimum reference set based feature selection for small sample classifications X Chen, JC Jeong Proceedings of the 24th international conference on Machine learning, 153-160, 2007 | 30 | 2007 |
| A new semantic functional similarity over gene ontology JC Jeong, X Chen IEEE/ACM transactions on computational biology and bioinformatics 12 (2 …, 2014 | 19 | 2014 |
| Deep transfer learning across cancer registries for information extraction from pathology reports M Alawad, S Gao, J Qiu, N Schaefferkoetter, JD Hinkle, HJ Yoon, ... 2019 IEEE EMBS International Conference on Biomedical & Health Informatics …, 2019 | 16 | 2019 |
| ST-analyzer: A web-based user interface for simulation trajectory analysis JC Jeong, S Jo, EL Wu, Y Qi, V Monje, MS Yeom, L Gorenstein, F Chen, ... Biophysical Journal 106 (2), 407a, 2014 | 16 | 2014 |
| Brooks 3rd, CL, MacKerell Jr J Lee, X Cheng, JM Swails, MS Yeom, PK Eastman, JA Lemkul, S Wei, ... AD, Klauda, JB, Im, W, 405-413, 2016 | 11 | 2016 |
| CHARMM-GUI input generator for NAMD J Lee, X Cheng, JM Swails, MS Yeom, PK Eastman, JA Lemkul, S Wei, ... GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 …, 2023 | 7 | 2023 |
| Evaluating topology-based metrics for GO term similarity measures JC Jeong, X Chen 2013 IEEE International Conference on Bioinformatics and Biomedicine, 43-48, 2013 | 5 | 2013 |
| J. Chem. Theory Comput. J Lee, X Cheng, JM Swails, MS Yeom, PK Eastman, JA Lemkul, S Wei, ... | 5 | 2011 |
| A new feature selection method for improving the precision of diagnosing abnormal protein sequences by support vector machine and vectorization method EM Kim, JC Jeong, HY Pae, BH Lee Adaptive and Natural Computing Algorithms: 8th International Conference …, 2007 | 3 | 2007 |
| Local data commons: the sleeping beauty in the community of data commons JC Jeong, I Hands, JM Kolesar, M Rao, B Davis, Y Dobyns, J Hurt-Mueller, ... BMC bioinformatics 23 (Suppl 12), 386, 2022 | 1 | 2022 |
