Opportunities and challenges in long-read sequencing data analysis SL Amarasinghe, S Su, X Dong, L Zappia, ME Ritchie, Q Gouil Genome biology 21 (1), 30, 2020 | 1266 | 2020 |
Splatter: simulation of single-cell RNA sequencing data L Zappia, B Phipson, A Oshlack Genome biology 18 (1), 174, 2017 | 744 | 2017 |
Benchmarking atlas-level data integration in single-cell genomics MD Luecken, M Büttner, K Chaichoompu, A Danese, M Interlandi, ... Nature methods 19 (1), 41-50, 2022 | 586 | 2022 |
Clustering trees: a visualization for evaluating clusterings at multiple resolutions L Zappia, A Oshlack Gigascience 7 (7), giy083, 2018 | 520 | 2018 |
Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database L Zappia, B Phipson, A Oshlack PLoS computational biology 14 (6), e1006245, 2018 | 282 | 2018 |
Best practices for single-cell analysis across modalities L Heumos, AC Schaar, C Lance, A Litinetskaya, F Drost, L Zappia, ... Nature Reviews Genetics 24 (8), 550-572, 2023 | 263 | 2023 |
Evaluation of variability in human kidney organoids B Phipson, PX Er, AN Combes, TA Forbes, SE Howden, L Zappia, HJ Yen, ... Nature methods 16 (1), 79-87, 2019 | 212 | 2019 |
Circulating tumour cells from patients with colorectal cancer have cancer stem cell hallmarks in ex vivo culture F Grillet, E Bayet, O Villeronce, L Zappia, EL Lagerqvist, S Lunke, ... Gut 66 (10), 1802-1810, 2017 | 197 | 2017 |
An integrated cell atlas of the lung in health and disease L Sikkema, C Ramírez-Suástegui, DC Strobl, TE Gillett, L Zappia, ... Nature Medicine 29 (6), 1563-1577, 2023 | 180 | 2023 |
Single-cell analysis reveals congruence between kidney organoids and human fetal kidney AN Combes, L Zappia, PX Er, A Oshlack, MH Little Genome medicine 11, 1-15, 2019 | 170 | 2019 |
Single cell analysis of the developing mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk AN Combes, B Phipson, KT Lawlor, A Dorison, R Patrick, L Zappia, ... Development 146 (12), dev178673, 2019 | 144 | 2019 |
Over 1000 tools reveal trends in the single-cell RNA-seq analysis landscape L Zappia, FJ Theis Genome biology 22, 1-18, 2021 | 122 | 2021 |
Kidney micro-organoids in suspension culture as a scalable source of human pluripotent stem cell-derived kidney cells SV Kumar, PX Er, KT Lawlor, A Motazedian, M Scurr, I Ghobrial, ... Development 146 (5), dev172361, 2019 | 118 | 2019 |
Gene length and detection bias in single cell RNA sequencing protocols B Phipson, L Zappia, A Oshlack F1000Research 6, 2017 | 74 | 2017 |
An integrated cell atlas of the human lung in health and disease L Sikkema, D Strobl, L Zappia, E Madissoon, NS Markov, L Zaragosi, ... BioRxiv, 2022.03. 10.483747, 2022 | 53 | 2022 |
Nephron progenitor commitment is a stochastic process influenced by cell migration KT Lawlor, L Zappia, J Lefevre, JS Park, NA Hamilton, A Oshlack, ... Elife 8, e41156, 2019 | 52 | 2019 |
Sfaira accelerates data and model reuse in single cell genomics DS Fischer, L Dony, M König, A Moeed, L Zappia, L Heumos, S Tritschler, ... Genome Biology 22, 1-21, 2021 | 27 | 2021 |
Population-level integration of single-cell datasets enables multi-scale analysis across samples C De Donno, S Hediyeh-Zadeh, AA Moinfar, M Wagenstetter, L Zappia, ... Nature Methods 20 (11), 1683-1692, 2023 | 21 | 2023 |
Unique Transcriptional Architecture in Airway Epithelial Cells and Macrophages Shapes Distinct Responses following Influenza Virus Infection Ex Vivo JZ Ma, WC Ng, L Zappia, LJ Gearing, M Olshansky, K Pham, K Cheong, ... Journal of virology 93 (6), 10.1128/jvi. 01986-18, 2019 | 18 | 2019 |
Delineating mouse β-cell identity during lifetime and in diabetes with a single cell atlas K Hrovatin, A Bastidas-Ponce, M Bakhti, L Zappia, M Büttner, C Salinno, ... Nature metabolism 5 (9), 1615-1637, 2023 | 16 | 2023 |