| VIROME: a standard operating procedure for analysis of viral metagenome sequences KE Wommack, J Bhavsar, SW Polson, J Chen, M Dumas, S Srinivasiah, ... Standards in genomic sciences 6 (3), 421-433, 2012 | 201 | 2012 |
| RefSeq database growth influences the accuracy of k-mer-based lowest common ancestor species identification DJ Nasko, S Koren, AM Phillippy, TJ Treangen Genome biology 19 (1), 1-10, 2018 | 120 | 2018 |
| Caught in the middle with multiple displacement amplification: the myth of pooling for avoiding multiple displacement amplification bias in a metagenome R Marine, C McCarren, V Vorrasane, D Nasko, E Crowgey, SW Polson, ... Microbiome 2 (1), 1-8, 2014 | 104 | 2014 |
| Counts and sequences, observations that continue to change our understanding of viruses in nature KE Wommack, DJ Nasko, J Chopyk, EG Sakowski Journal of Microbiology 53, 181-192, 2015 | 77 | 2015 |
| Community annotation and bioinformatics workforce development in concert—Little Skate Genome Annotation Workshops and Jamborees Q Wang, CN Arighi, BL King, SW Polson, J Vincent, C Chen, H Huang, ... Database 2012, bar064, 2012 | 62 | 2012 |
| Ribonucleotide reductases reveal novel viral diversity and predict biological and ecological features of unknown marine viruses EG Sakowski, EV Munsell, M Hyatt, W Kress, SJ Williamson, DJ Nasko, ... Proceedings of the National Academy of Sciences 111 (44), 15786-15791, 2014 | 59 | 2014 |
| The in-feed antibiotic carbadox induces phage gene transcription in the swine gut microbiome TA Johnson, T Looft, AJ Severin, DO Bayles, DJ Nasko, KE Wommack, ... MBio 8 (4), 10.1128/mbio. 00709-17, 2017 | 38 | 2017 |
| Agricultural freshwater pond supports diverse and dynamic bacterial and viral populations J Chopyk, S Allard, DJ Nasko, A Bui, EF Mongodin, AR Sapkota Frontiers in microbiology, 792, 2018 | 36 | 2018 |
| Novel chaperonins are prevalent in the virioplankton and demonstrate links to viral biology and ecology RL Marine, DJ Nasko, J Wray, SW Polson, KE Wommack The ISME journal 11 (11), 2479-2491, 2017 | 27 | 2017 |
| CRISPR spacers indicate preferential matching of specific virioplankton genes DJ Nasko, BD Ferrell, RM Moore, JD Bhavsar, SW Polson, KE Wommack MBio 10 (2), 10.1128/mbio. 02651-18, 2019 | 24 | 2019 |
| Comparative metagenomic analysis of microbial taxonomic and functional variations in untreated surface and reclaimed waters used in irrigation applications J Chopyk, DJ Nasko, S Allard, A Bui, T Treangen, M Pop, EF Mongodin, ... Water research 169, 115250, 2020 | 22 | 2020 |
| Family A DNA polymerase phylogeny uncovers diversity and replication gene organization in the virioplankton DJ Nasko, J Chopyk, EG Sakowski, BD Ferrell, SW Polson, KE Wommack Frontiers in microbiology 9, 3053, 2018 | 20 | 2018 |
| Seasonal dynamics in taxonomy and function within bacterial and viral metagenomic assemblages recovered from a freshwater agricultural pond J Chopyk, DJ Nasko, S Allard, A Bui, M Pop, EF Mongodin, AR Sapkota Environmental Microbiome 15 (1), 1-16, 2020 | 16 | 2020 |
| Zero-valent iron sand filtration reduces concentrations of virus-like particles and modifies virome community composition in reclaimed water used for agricultural irrigation J Chopyk, P Kulkarni, DJ Nasko, R Bradshaw, KE Kniel, P Chiu, ... BMC research notes 12, 1-8, 2019 | 16 | 2019 |
| Metagenomic analysis of bacterial and viral assemblages from a freshwater creek and irrigated field reveals temporal and spatial dynamics J Chopyk, DJ Nasko, S Allard, MT Callahan, A Bui, AMC Ferelli, ... Science of the Total Environment 706, 135395, 2020 | 15 | 2020 |
| SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning A Balaji, B Kille, AD Kappell, GD Godbold, M Diep, RAL Elworth, Z Qian, ... Genome Biology 23 (1), 133, 2022 | 14 | 2022 |
| Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up … JS Meisel, DJ Nasko, B Brubach, V Cepeda-Espinoza, J Chopyk, ... Microbiome 6, 1-10, 2018 | 10 | 2018 |
| Zero-valent iron sand filtration can reduce human and plant pathogenic bacteria while increasing plant growth promoting bacteria in reclaimed water P Kulkarni, ND Olson, AQ Bui, RN Bradshaw, LP Del Collo, LE Hittle, ... Frontiers in Environmental Science 8, 541921, 2020 | 7 | 2020 |
| Association between private drinking water wells and the incidence of Campylobacteriosis in Maryland: An ecological analysis using Foodborne Diseases Active Surveillance … RT Murray, R Cruz-Cano, D Nasko, D Blythe, P Ryan, MM Boyle, ... Environmental Research 188, 109773, 2020 | 5 | 2020 |
| The in-feed antibiotic carbadox induces phage gene transcription in the swine gut microbiome. mBio 8: e00709-17 TA Johnson, T Looft, AJ Severin, DO Bayles, DJ Nasko, KE Wommack, ... | 4 | 2017 |
