| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 14989 | 2019 |
| The transcriptome and proteome of the diatom Thalassiosira pseudonana reveal a diverse phosphorus stress response ST Dyhrman, BD Jenkins, TA Rynearson, MA Saito, ML Mercier, ... PloS one 7 (3), e33768, 2012 | 343 | 2012 |
| Probing the evolution, ecology and physiology of marine protists using transcriptomics DA Caron, H Alexander, AE Allen, JM Archibald, EV Armbrust, C Bachy, ... Nature Reviews Microbiology 15 (1), 6-20, 2017 | 190 | 2017 |
| Metatranscriptome analyses indicate resource partitioning between diatoms in the field H Alexander, BD Jenkins, TA Rynearson, ST Dyhrman Proceedings of the National Academy of Sciences 112 (17), E2182-E2190, 2015 | 181 | 2015 |
| Functional group-specific traits drive phytoplankton dynamics in the oligotrophic ocean H Alexander, M Rouco, ST Haley, ST Wilson, DM Karl, ST Dyhrman Proceedings of the National Academy of Sciences 112 (44), E5972-E5979, 2015 | 137 | 2015 |
| Virus-host relationships of marine single-celled eukaryotes resolved from metatranscriptomics M Moniruzzaman, LL Wurch, H Alexander, ST Dyhrman, CJ Gobler, ... Nature Communications 8 (1), 16054, 2017 | 101 | 2017 |
| Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes LK Johnson, H Alexander, CT Brown Gigascience 8 (4), giy158, 2019 | 89 | 2019 |
| Sixty years of Sverdrup: A retrospective of progress in the study of phytoplankton blooms AD Fischer, EA Moberg, H Alexander, EF Brownlee, KR Hunter-Cevera, ... Oceanography 27 (1), 222-235, 2014 | 58 | 2014 |
| Integrating “big data” into aquatic ecology: Challenges and opportunities JM Durden, JY Luo, H Alexander, AM Flanagan, L Grossmann Limnology and Oceanography Bulletin 26 (4), 101-108, 2017 | 46 | 2017 |
| Identifying reference genes with stable expression from high throughput sequence data H Alexander, BD Jenkins, TA Rynearson, MA Saito, ML Mercier, ... Frontiers in Microbiology 3, 31186, 2012 | 44 | 2012 |
| Phosphorus availability regulates intracellular nucleotides in marine eukaryotic phytoplankton EB Kujawinski, K Longnecker, H Alexander, ST Dyhrman, CL Fiore, ... Limnology and Oceanography Letters 2 (4), 119-129, 2017 | 36 | 2017 |
| Auxotrophic interactions: a stabilizing attribute of aquatic microbial communities? WM Johnson, H Alexander, RL Bier, DR Miller, ME Muscarella, KJ Pitz, ... FEMS Microbiology Ecology 96 (11), fiaa115, 2020 | 35 | 2020 |
| Eukaryotic genomes from a global metagenomic data set illuminate trophic modes and biogeography of ocean plankton H Alexander, SK Hu, AI Krinos, M Pachiadaki, BJ Tully, CJ Neely, T Reiter mBio 14 (6), e01676-23, 2023 | 31 | 2023 |
| Conserved transcriptional responses to nutrient stress in bloom-forming algae MJ Harke, AR Juhl, ST Haley, H Alexander, ST Dyhrman Frontiers in microbiology 8, 276783, 2017 | 31 | 2017 |
| Shifting metabolic priorities among key protistan taxa within and below the euphotic zone SK Hu, Z Liu, H Alexander, V Campbell, PE Connell, ST Dyhrman, ... Environmental Microbiology 20 (8), 2865-2879, 2018 | 29 | 2018 |
| Transcriptional response of the harmful raphidophyte Heterosigma akashiwo to nitrate and phosphate stress ST Haley, H Alexander, AR Juhl, ST Dyhrman Harmful Algae 68, 258-270, 2017 | 28 | 2017 |
| Seasonal and geographical transitions in eukaryotic phytoplankton community structure in the Atlantic and Pacific Oceans CJ Choi, V Jimenez, DM Needham, C Poirier, C Bachy, H Alexander, ... Frontiers in Microbiology 11, 542372, 2020 | 27 | 2020 |
| Transcriptional shifts highlight the role of nutrients in harmful brown tide dynamics LL Wurch, H Alexander, KR Frischkorn, ST Haley, CJ Gobler, ST Dyhrman Frontiers in Microbiology 10, 434545, 2019 | 24 | 2019 |
| The osmolyte ties that bind: genomic insights into synthesis and breakdown of organic osmolytes in marine microbes EL McParland, H Alexander, WM Johnson Frontiers in Marine Science 8, 689306, 2021 | 22 | 2021 |
| EUKulele: Taxonomic annotation of the unsung eukaryotic microbes AI Krinos, SK Hu, NR Cohen, H Alexander arXiv preprint arXiv:2011.00089, 2020 | 22 | 2020 |
Sonya DyhrmanEarth and Environmental Sciences, Columbia University在 ldeo.columbia.edu 的电子邮件经过验证
