| Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ... Science 330 (6012), 1787-1797, 2010 | 1084 | 2010 |
| Comprehensive analysis of the chromatin landscape in Drosophila melanogaster PV Kharchenko, AA Alekseyenko, YB Schwartz, A Minoda, NC Riddle, ... Nature 471 (7339), 480-485, 2011 | 983 | 2011 |
| Double-strand breaks in heterochromatin move outside of a dynamic HP1a domain to complete recombinational repair I Chiolo, A Minoda, SU Colmenares, A Polyzos, SV Costes, GH Karpen Cell 144 (5), 732-744, 2011 | 576 | 2011 |
| An assessment of histone-modification antibody quality TA Egelhofer, A Minoda, S Klugman, K Lee, P Kolasinska-Zwierz, ... Nature structural & molecular biology 18 (1), 91-93, 2011 | 485 | 2011 |
| Comparative analysis of metazoan chromatin organization JWK Ho, YL Jung, T Liu, BH Alver, S Lee, K Ikegami, KA Sohn, A Minoda, ... Nature 512 (7515), 449-452, 2014 | 419 | 2014 |
| Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin NC Riddle, A Minoda, PV Kharchenko, AA Alekseyenko, YB Schwartz, ... Genome research 21 (2), 147-163, 2011 | 281 | 2011 |
| Single-cell transcriptomics reveals expansion of cytotoxic CD4 T cells in supercentenarians K Hashimoto, T Kouno, T Ikawa, N Hayatsu, Y Miyajima, H Yabukami, ... Proceedings of the National Academy of Sciences 116 (48), 24242-24251, 2019 | 252 | 2019 |
| Nature and function of insulator protein binding sites in the Drosophila genome YB Schwartz, D Linder-Basso, PV Kharchenko, MY Tolstorukov, M Kim, ... Genome research 22 (11), 2188-2198, 2012 | 202 | 2012 |
| Impact of sequencing depth in ChIP-seq experiments YL Jung, LJ Luquette, JWK Ho, F Ferrari, M Tolstorukov, A Minoda, ... Nucleic acids research 42 (9), e74-e74, 2014 | 200 | 2014 |
| Functional annotation of human long noncoding RNAs via molecular phenotyping JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ... Genome research 30 (7), 1060-1072, 2020 | 140 | 2020 |
| Peripheral PDGFRα+gp38+ mesenchymal cells support the differentiation of fetal liver–derived ILC2 S Koga, K Hozumi, K Hirano, M Yazawa, T Terooatea, A Minoda, ... Journal of Experimental Medicine 215 (6), 1609-1626, 2018 | 111 | 2018 |
| Enrichment of HP1a on Drosophila chromosome 4 genes creates an alternate chromatin structure critical for regulation in this heterochromatic domain NC Riddle, YL Jung, T Gu, AA Alekseyenko, D Asker, H Gui, ... Public Library of Science 8 (9), e1002954, 2012 | 72 | 2012 |
| Sequence-Specific Targeting of Dosage Compensation in Drosophila Favors an Active Chromatin Context AA Alekseyenko, JWK Ho, S Peng, M Gelbart, MY Tolstorukov, ... PLoS genetics 8 (4), e1002646, 2012 | 61 | 2012 |
| Chromatin accessibility landscape of articular knee cartilage reveals aberrant enhancer regulation in osteoarthritis Y Liu, JC Chang, CC Hon, N Fukui, N Tanaka, Z Zhang, MTM Lee, ... Scientific Reports 8 (1), 15499, 2018 | 47 | 2018 |
| Priming of lineage-specifying genes by Bcl11b is required for lineage choice in post-selection thymocytes S Kojo, H Tanaka, TA Endo, S Muroi, Y Liu, W Seo, M Tenno, ... Nature communications 8 (1), 702, 2017 | 44 | 2017 |
| BAF53/Arp4 homolog Alp5 in fission yeast is required for histone H4 acetylation, kinetochore-spindle attachment, and gene silencing at centromere A Minoda, S Saitoh, K Takahashi, T Toda Molecular biology of the cell 16 (1), 316-327, 2005 | 43 | 2005 |
| OVOL2 induces mesenchymal-to-epithelial transition in fibroblasts and enhances cell-state reprogramming towards epithelial lineages K Watanabe, Y Liu, S Noguchi, M Murray, JC Chang, M Kishima, ... Scientific Reports 9 (1), 6490, 2019 | 36 | 2019 |
| JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states L Handoko, B Kaczkowski, CC Hon, M Lizio, M Wakamori, T Matsuda, ... Epigenetics 13 (4), 410-431, 2018 | 36 | 2018 |
| Identification of chromatin marks at TERRA promoter and encoding region Y Negishi, H Kawaji, A Minoda, K Usui Biochemical and biophysical research communications 467 (4), 1052-1057, 2015 | 22 | 2015 |
| Integrative analysis of scRNA-seq and scATAC-seq revealed transit-amplifying thymic epithelial cells expressing autoimmune regulator T Miyao, M Miyauchi, ST Kelly, TW Terooatea, T Ishikawa, E Oh, S Hirai, ... Elife 11, e73998, 2022 | 13 | 2022 |
